RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 MMP25Q9NPA2 562 aa19.22■□□□□ 0.67
VPS53-210ENST00000571456 SDAD1Q9NVU7 687 aaKnown RBP eCLIP19.22■□□□□ 0.671e-7■□□□□ 10.9
VPS53-210ENST00000571456 HEY2Q9UBP5 337 aa19.22■□□□□ 0.67
VPS53-210ENST00000571456 ENTPD4Q9Y227 616 aa19.22■□□□□ 0.67
VPS53-210ENST00000571456 PCDHGA9Q9Y5G4 932 aaKnown RBP19.22■□□□□ 0.67
VPS53-210ENST00000571456 MKRN2OSH3BPM6 223 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 ZNF195O14628 629 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 OR10H2O60403 315 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 CEACAM4O75871 244 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 SEC24DO94855 1032 aaPredicted RBP19.21■□□□□ 0.67
VPS53-210ENST00000571456 DDAH2O95865 285 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 ATP1B1P05026 303 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 TNNI3P19429 210 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 SLC26A5P58743 744 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 FAM47EQ6ZV65 393 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 LIX1Q8N485 282 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 ERP27Q96DN0 273 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 CCDC28BQ9BUN5 200 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 TRIM55Q9BYV6 548 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 SLC35C2Q9NQQ7 365 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 PNO1Q9NRX1 252 aaKnown RBP19.21■□□□□ 0.67
VPS53-210ENST00000571456 ATAD3AQ9NVI7 634 aa19.21■□□□□ 0.67
VPS53-210ENST00000571456 CELSR1Q9NYQ6 3014 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 GLOD5A6NK44 160 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 TGFBR3LH3BV60 316 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 POLR3GO15318 223 aaPredicted RBP19.2■□□□□ 0.66
VPS53-210ENST00000571456 ERAL1O75616 437 aaKnown RBP19.2■□□□□ 0.66
VPS53-210ENST00000571456 ALPPP05187 535 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 IFI6P09912 130 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 TROVE2P10155 538 aaKnown RBP eCLIP19.2■□□□□ 0.66
VPS53-210ENST00000571456 TACR1P25103 407 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 MPIP34949 423 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 CLDN8P56748 225 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 GUCY1A3Q02108 690 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 PDE7AQ13946 482 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 MYBPC3Q14896 1274 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 DPY19L1Q2PZI1 675 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 BTBD16Q32M84 506 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 LGI4Q8N135 537 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 LRRC25Q8N386 305 aaPredicted RBP19.2■□□□□ 0.66
VPS53-210ENST00000571456 CDC26Q8NHZ8 85 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 VMP1Q96GC9 406 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 PPP1R36Q96LQ0 422 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 TSSK3Q96PN8 268 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 MRGBPQ9NV56 204 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 COPS7AQ9UBW8 275 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 TEKT2Q9UIF3 430 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 APCP25054 2843 aa19.2■□□□□ 0.66
VPS53-210ENST00000571456 ADGRG4Q8IZF6 3080 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 C17orf105B2RV13 164 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 DIAPH2O60879 1101 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 PRKRAO75569 313 aaKnown RBP19.19■□□□□ 0.66
VPS53-210ENST00000571456 IDO1P14902 403 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 ITGA3P26006 1051 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 EPHA3P29320 983 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 NTSP30990 170 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 CLCN2P51788 898 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 CLNS1AP54105 237 aaKnown RBP19.19■□□□□ 0.66
VPS53-210ENST00000571456 GSTA3Q16772 222 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 OR4N5Q8IXE1 308 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 NFAM1Q8NET5 270 aaPredicted RBP19.19■□□□□ 0.66
VPS53-210ENST00000571456 OR8K3Q8NH51 312 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 PTPMT1Q8WUK0 201 aaPredicted RBP19.19■□□□□ 0.66
VPS53-210ENST00000571456 RIT1Q92963 219 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 PPCDCQ96CD2 204 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 FBXL20Q96IG2 436 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 C1orf50Q9BV19 199 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 TCF7L2Q9NQB0 619 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 C5AR2Q9P296 337 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 ATP6V1HQ9UI12 483 aa19.19■□□□□ 0.66
VPS53-210ENST00000571456 PCSK5Q92824 1860 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 K7EM74 188 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 SCAMP2O15127 329 aaKnown RBP19.18■□□□□ 0.66
VPS53-210ENST00000571456 VIMP08670 466 aaKnown RBP19.18■□□□□ 0.66
VPS53-210ENST00000571456 G6PDP11413 515 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 CHAF1BQ13112 559 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 NXNQ6DKJ4 435 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 TCTN3Q6NUS6 607 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 CAMKMTQ7Z624 323 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 GALNT12Q8IXK2 581 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 OR1N1Q8NGS0 311 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 ZFP28Q8NHY6 868 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 ZNF675Q8TD23 568 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 ELP5Q8TE02 316 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 CNRIP1Q96F85 164 aaPredicted RBP19.18■□□□□ 0.66
VPS53-210ENST00000571456 EGLN2Q96KS0 407 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 ZNF681Q96N22 645 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 BBS4Q96RK4 519 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 WDR55Q9H6Y2 383 aaPredicted RBP19.18■□□□□ 0.66
VPS53-210ENST00000571456 GPR83Q9NYM4 423 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 GIMAP2Q9UG22 337 aa19.18■□□□□ 0.66
VPS53-210ENST00000571456 IGHV3-20A0A0C4DH32 117 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 TTLL8A6PVC2 850 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 MYO1GB0I1T2 1018 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 BCAS2O75934 225 aaPredicted RBP19.17■□□□□ 0.66
VPS53-210ENST00000571456 CCL11P51671 97 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 GPR143P51810 404 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 AQP5P55064 265 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 ID2Q02363 134 aa19.17■□□□□ 0.66
VPS53-210ENST00000571456 MAP4K2Q12851 820 aa19.17■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms