RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 F7P08709 466 aaPredicted RBP10.09□□□□□ -0.79
VPS53-207ENST00000570510 FBXO45P0C2W1 286 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 SLCO1A2P46721 670 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 MTTPP55157 894 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 LIM2P55344 173 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 AP1S2P56377 157 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 RPS4XP62701 263 aaKnown RBP10.09□□□□□ -0.79
VPS53-207ENST00000570510 ID2Q02363 134 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 DCST1Q5T197 706 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 NXPE4Q6UWF7 544 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 SPNS2Q8IVW8 549 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 DENND6AQ8IWF6 608 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 OR56A3Q8NH54 315 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 ZNF721Q8TF20 911 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 CERS2Q96G23 380 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 OR4K3Q96R72 315 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 SERINC2Q96SA4 455 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 KCNK17Q96T54 332 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 CSF3RQ99062 836 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 TUBA1CQ9BQE3 449 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 REXO4Q9GZR2 422 aaKnown RBP10.09□□□□□ -0.79
VPS53-207ENST00000570510 PSD3Q9NYI0 1048 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 TAS2R13Q9NYV9 303 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 MOCS1Q9NZB8 636 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 CNOT11Q9UKZ1 510 aaKnown RBP10.09□□□□□ -0.79
VPS53-207ENST00000570510 DAPP1Q9UN19 280 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 MAPRE3Q9UPY8 281 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 C15orf41Q9Y2V0 281 aa10.09□□□□□ -0.79
VPS53-207ENST00000570510 CCDC189A1A4V9 331 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 CTAGE15A4D2H0 777 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 ANKRD33BA6NCL7 494 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 LRIT2A6NDA9 550 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 GOLGA8MH3BSY2 632 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 CYR61O00622 381 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 TP73O15350 636 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 SPRY1O43609 319 aaPredicted RBP10.08□□□□□ -0.8
VPS53-207ENST00000570510 CHMP24386 653 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 UGT2B10P36537 528 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 TMED10P49755 219 aaKnown RBP10.08□□□□□ -0.8
VPS53-207ENST00000570510 NAGLUP54802 743 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 RPS6KA2Q15349 733 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 HSP90AA5PQ58FG0 334 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 BEX5Q5H9J7 111 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 HLA-DQA1Q5Y7H0 255 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 ZNF549Q6P9A3 640 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 ZNF704Q6ZNC4 412 aaPredicted RBP10.08□□□□□ -0.8
VPS53-207ENST00000570510 ZNF550Q7Z398 422 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 CCDC91Q7Z6B0 441 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 YRDCQ86U90 279 aaKnown RBP10.08□□□□□ -0.8
VPS53-207ENST00000570510 CTAGE6Q86UF2 777 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 THOC6Q86W42 341 aaKnown RBP10.08□□□□□ -0.8
VPS53-207ENST00000570510 RELL1Q8IUW5 271 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 C9orf40Q8IXQ3 194 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 KRT78Q8N1N4 520 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 OR1J4Q8NGS1 313 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 OR14L1PQ8NHC6 308 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 KIF18AQ8NI77 898 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 CDKL2Q92772 493 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 ANKRD9Q96BM1 317 aaPredicted RBP10.08□□□□□ -0.8
VPS53-207ENST00000570510 MS4A6EQ96DS6 147 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 LINGO1Q96FE5 620 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 PGM2Q96G03 612 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 PDLIM5Q96HC4 596 aaKnown RBP10.08□□□□□ -0.8
VPS53-207ENST00000570510 KLHL4Q9C0H6 718 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 SHARPINQ9H0F6 387 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 PROK2Q9HC23 129 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 RYDENQ9NUL5 291 aaKnown RBP10.08□□□□□ -0.8
VPS53-207ENST00000570510 TEX10Q9NXF1 929 aaPredicted RBP10.08□□□□□ -0.8
VPS53-207ENST00000570510 ELOVL5Q9NYP7 299 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 LPAR3Q9UBY5 353 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 MED16Q9Y2X0 877 aa10.08□□□□□ -0.8
VPS53-207ENST00000570510 A0A1W2PNV4 684 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 CDC7O00311 574 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 GNB5O14775 395 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 SOX30O94993 753 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 CPN1P15169 458 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 KRT15P19012 456 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 CERS1P27544 350 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 HNRNPH1P31943 449 aaKnown RBP10.07□□□□□ -0.8
VPS53-207ENST00000570510 ELK3P41970 407 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 SLC1A2P43004 574 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 TERF1P54274 439 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 NRG3P56975 720 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 IL2P60568 153 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 PLIN5Q00G26 463 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 MGAT5Q09328 741 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 NAB1Q13506 487 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 CAPRIN1Q14444 709 aaKnown RBP10.07□□□□□ -0.8
VPS53-207ENST00000570510 SETDB1Q15047 1291 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 NTRK2Q16620 822 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 TEDDM1Q5T9Z0 273 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 ANKRD34AQ69YU3 496 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 OR2A2Q6IF42 318 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 TMIGD1Q6UXZ0 262 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 RNF111Q6ZNA4 994 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 AGGF1Q8N302 714 aaeCLIP10.07□□□□□ -0.8
VPS53-207ENST00000570510 MMGT1Q8N4V1 131 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 FAM83FQ8NEG4 500 aaPredicted RBP10.07□□□□□ -0.8
VPS53-207ENST00000570510 OR2L5Q8NG80 312 aa10.07□□□□□ -0.8
VPS53-207ENST00000570510 PYROXD1Q8WU10 500 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms