RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SLC6A13Q9NSD5 602 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 ZIM2Q9NZV7 527 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 NTMQ9P121 344 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 DTX4Q9Y2E6 619 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 KCNMB2Q9Y691 235 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 SPACA6W5XKT8 324 aa8.66□□□□□ -1.02
VPS35-211ENST00000569950 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 C17orf105B2RV13 164 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 PDPK1O15530 556 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 RRP8O43159 456 aaKnown RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 ZNF354AO60765 605 aaPredicted RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 ERAL1O75616 437 aaKnown RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 HPP00738 406 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 ITGAMP11215 1152 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 PORP16435 677 aaPredicted RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 PCSK2P16519 638 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 CSNK2A2P19784 350 aaPredicted RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 PIK3R1P27986 724 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 SSTR4P31391 388 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 CDK9P50750 372 aaKnown RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 SLC37A1P57057 533 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 ACTN3Q08043 901 aaPredicted RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 VAC14Q08AM6 782 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 MAP4K2Q12851 820 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 SERTAD2Q14140 314 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 MLC1Q15049 377 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 FAM174BQ3ZCQ3 159 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 TRMT12Q53H54 448 aaKnown RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 MFSD4BQ5TF39 518 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 PLAG1Q6DJT9 500 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 H3F3CQ6NXT2 135 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 BLOC1S3Q6QNY0 202 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 PCSK4Q6UW60 755 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 CCDC81Q6ZN84 652 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 RAB43Q86YS6 212 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 APLFQ8IW19 511 aaPredicted RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 C9orf40Q8IXQ3 194 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 CCDC116Q8IYX3 515 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 LRRC25Q8N386 305 aaPredicted RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 B3GNT7Q8NFL0 401 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 ADCY4Q8NFM4 1077 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 SLC2A12Q8TD20 617 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 PPCDCQ96CD2 204 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 GIMAP5Q96F15 307 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 FBXL20Q96IG2 436 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 BHLHE41Q9C0J9 482 aaPredicted RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 FAM107BQ9H098 131 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 EPS8L2Q9H6S3 715 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 WDR41Q9HAD4 459 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 ZNF160Q9HCG1 818 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 PRM3Q9NNZ6 103 aa8.65□□□□□ -1.02
VPS35-211ENST00000569950 PNO1Q9NRX1 252 aaKnown RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 ACSS1Q9NUB1 689 aaPredicted RBP8.65□□□□□ -1.02
VPS35-211ENST00000569950 TRBV5-3A0A0A0MS03 114 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 FAM234BA2RU67 622 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 ARGFXA6NJG6 315 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 CAPN14A8MX76 684 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 PLOD2O00469 737 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 FBP2O00757 339 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 FCHO1O14526 889 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 PLOD3O60568 738 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 SLC22A3O75751 556 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 FAM107AO95990 144 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 IFI6P09912 130 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 COX7A2P14406 83 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 SOX11P35716 441 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 HPCAL1P37235 193 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 MAP3K8P41279 467 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 MC3RP41968 323 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 CDKN2CP42773 168 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 EMDP50402 254 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 TMPRSS3P57727 454 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 HBA1P69905 142 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 PLIN5Q00G26 463 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 STX4Q12846 297 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 KLF10Q13118 480 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 GAB1Q13480 694 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 SQLEQ14534 574 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 TBR1Q16650 682 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 DEFB109BQ30KR1 87 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 LINC00303Q3SY05 128 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 CPTPQ5TA50 214 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 GK5Q6ZS86 529 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 GPR155Q7Z3F1 870 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 RETREG3Q86VR2 466 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 MSRB3Q8IXL7 192 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 MIER2Q8N344 545 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 ANKS4BQ8N8V4 417 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 ZNF441Q8N8Z8 693 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 MORN4Q8NDC4 146 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 OR1N1Q8NGS0 311 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 OR14A16Q8NHC5 309 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 GOT1L1Q8NHS2 421 aaPredicted RBP8.64□□□□□ -1.03
VPS35-211ENST00000569950 METTL21AQ8WXB1 218 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 THAP4Q8WY91 577 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 TTC9Q92623 222 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 HOXB13Q92826 284 aaPredicted RBP8.64□□□□□ -1.03
VPS35-211ENST00000569950 KAT2AQ92830 837 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 NCLNQ969V3 563 aa8.64□□□□□ -1.03
VPS35-211ENST00000569950 VPS33AQ96AX1 596 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms