RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 EXO1Q9UQ84 846 aaKnown RBP13.75□□□□□ -0.21
VPS35-210ENST00000568784 ZNF821O75541 412 aaPredicted RBP13.75□□□□□ -0.21
VPS35-210ENST00000568784 RAB36O95755 333 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 CSF3P09919 207 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 TYRP14679 529 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 NPPBP16860 134 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 PSMA3P25788 255 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 ELAVL4P26378 380 aaKnown RBP13.75□□□□□ -0.21
VPS35-210ENST00000568784 PSMB5P28074 263 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 IFNA8P32881 189 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 LRRC32Q14392 662 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 ZSWIM7Q19AV6 140 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 IL20RBQ6UXL0 311 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 ADAMTS19Q8TE59 1207 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 SRRQ9GZT4 340 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 BRF2Q9HAW0 419 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 NDRG2Q9UN36 371 aaKnown RBP13.75□□□□□ -0.21
VPS35-210ENST00000568784 PCDHGB2Q9Y5G2 931 aa13.75□□□□□ -0.21
VPS35-210ENST00000568784 SLC9A3P48764 834 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 ACSM5Q6NUN0 579 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 LYPD8Q6UX82 237 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 ELMOD2Q8IZ81 293 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 TP53I13Q8NBR0 393 aaPredicted RBP13.74□□□□□ -0.21
VPS35-210ENST00000568784 SLC37A3Q8NCC5 494 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 ING5Q8WYH8 240 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 TIFAQ96CG3 184 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 SLC35G5Q96KT7 338 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 ZSCAN5AQ9BUG6 496 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 HCN2Q9UL51 889 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 FFAR1O14842 300 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 TEX28O15482 410 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 UGDHO60701 494 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 OR2B3O76000 313 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 CHRNB1P11230 501 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 UQCRC2P22695 453 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 PRPH2P23942 346 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 MPEG1Q2M385 716 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 ZDHHC20Q5W0Z9 365 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 TCTN3Q6NUS6 607 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 SLC30A6Q6NXT4 461 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 METTL3Q86U44 580 aaKnown RBP13.74□□□□□ -0.21
VPS35-210ENST00000568784 PGBD3Q8N328 593 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 OR4F15Q8NGB8 312 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 OR9A1PQ8NGU1 263 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 DEDD2Q8WXF8 326 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 WFDC6Q9BQY6 131 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 C3orf14Q9HBI5 128 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 FTSJ1Q9UET6 329 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 FBXW2Q9UKT8 454 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.74□□□□□ -0.21
VPS35-210ENST00000568784 SNTNA6NMZ2 147 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 PITPNM1O00562 1244 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 NTN1O95631 604 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 SOX18P35713 384 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 TALDO1P37837 337 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 P2RY14Q15391 338 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 SLC35F1Q5T1Q4 408 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 OR5AR1Q8NGP9 310 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 NEIL3Q8TAT5 605 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 KLK6Q92876 244 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 RAD9AQ99638 391 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 VN1R3Q9BXE9 311 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 NLRC5Q86WI3 1866 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 DOCK6Q96HP0 2047 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 B4DXG7 233 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 CA12O43570 354 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 MMP20O60882 483 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 RB1P06400 928 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 C8AP07357 584 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 PRKCAP17252 672 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 GABRB1P18505 474 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 TMEM150AQ86TG1 271 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 AMIGO1Q86WK6 493 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 OR2A12Q8NGT7 310 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 SLC38A2Q96QD8 506 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 C17orf62Q9BQA9 187 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 OR51I1Q9H343 314 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 CACYBPQ9HB71 228 aaKnown RBP13.74□□□□□ -0.21
VPS35-210ENST00000568784 TAAR2Q9P1P5 351 aa13.74□□□□□ -0.21
VPS35-210ENST00000568784 A0A075B6Q4 140 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 EIF3FO00303 357 aaPredicted RBP13.73□□□□□ -0.21
VPS35-210ENST00000568784 CRYBB2P43320 205 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 KIR2DL3P43628 341 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 MVDP53602 400 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 CDH11P55287 796 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 CTBP2P56545 445 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 RHAGQ02094 409 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 KCNC3Q14003 757 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 FNDC1Q4ZHG4 1894 aaPredicted RBP13.73□□□□□ -0.21
VPS35-210ENST00000568784 C9orf64Q5T6V5 341 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 ASTLQ6HA08 431 aaPredicted RBP13.73□□□□□ -0.21
VPS35-210ENST00000568784 NXPE4Q6UWF7 544 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 ZNF614Q8N883 585 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 GRPEL2Q8TAA5 225 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 GALNT9Q9HCQ5 603 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 ASAH2Q9NR71 780 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 V9GYH0 126 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 FAM183AA6NL82 134 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 FAM170BA6NMN3 283 aa13.73□□□□□ -0.21
VPS35-210ENST00000568784 TMEM229AB2RXF0 380 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms