RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 PDE7AQ13946 482 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 CEBPEQ15744 281 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 HSP90B2PQ58FF3 399 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 ZNF468Q5VIY5 522 aaPredicted RBP18.17■□□□□ 0.5
CLN3-225ENST00000566824 IGFL3Q6UXB1 125 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 RPS19BP1Q86WX3 136 aaKnown RBP18.17■□□□□ 0.5
CLN3-225ENST00000566824 GALNT12Q8IXK2 581 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 C9orf40Q8IXQ3 194 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 LRRC25Q8N386 305 aaPredicted RBP18.17■□□□□ 0.5
CLN3-225ENST00000566824 ZNF843Q8N446 348 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 CIDECQ96AQ7 238 aaPredicted RBP18.17■□□□□ 0.5
CLN3-225ENST00000566824 OR52B2Q96RD2 323 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 LMF1Q96S06 567 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 PELOQ9BRX2 385 aaKnown RBP18.17■□□□□ 0.5
CLN3-225ENST00000566824 REEP4Q9H6H4 257 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 MIEF1Q9NQG6 463 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 PFDN4Q9NQP4 134 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 TAS2R7Q9NYW3 318 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 STMN3Q9NZ72 180 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 LUZP4Q9P127 313 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 G3BP2Q9UN86 482 aaKnown RBP18.17■□□□□ 0.5
CLN3-225ENST00000566824 WBP11Q9Y2W2 641 aaKnown RBP18.17■□□□□ 0.5
CLN3-225ENST00000566824 ZNF780BQ9Y6R6 833 aa18.17■□□□□ 0.5
CLN3-225ENST00000566824 ZNF354AO60765 605 aaPredicted RBP18.16■□□□□ 0.5
CLN3-225ENST00000566824 NME6O75414 186 aaPredicted RBP18.16■□□□□ 0.5
CLN3-225ENST00000566824 ALPPP05187 535 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 PCSK2P16519 638 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 EFNA1P20827 205 aaPredicted RBP18.16■□□□□ 0.5
CLN3-225ENST00000566824 MAPK1P28482 360 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 SLC37A1P57057 533 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 MLF1P58340 268 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 RNF4P78317 190 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 MRPS35P82673 323 aaKnown RBP18.16■□□□□ 0.5
CLN3-225ENST00000566824 EXOSC7Q15024 291 aaKnown RBP18.16■□□□□ 0.5
CLN3-225ENST00000566824 TRMT12Q53H54 448 aaKnown RBP18.16■□□□□ 0.5
CLN3-225ENST00000566824 RGS9BPQ6ZS82 235 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 KIRREL3Q8IZU9 778 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 OR7A2PQ8NGA2 310 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 OR9A2Q8NGT5 310 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 KAT2AQ92830 837 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 BRINP2Q9C0B6 783 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 ANKRD10Q9NXR5 420 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 ASIC5Q9NY37 505 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 ZNF639Q9UID6 485 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 PRRC2CQ9Y520 2896 aaKnown RBP18.16■□□□□ 0.5
CLN3-225ENST00000566824 PCDHGB7Q9Y5F8 929 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 USH1CQ9Y6N9 552 aa18.16■□□□□ 0.5
CLN3-225ENST00000566824 NUP214P35658 2090 aaPredicted RBP18.15■□□□□ 0.5
CLN3-225ENST00000566824 TCP11X1B4DZS4 312 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 DYNC1I1O14576 645 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 ZFAND5O76080 213 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 PRPS2P11908 318 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 LBPP18428 481 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 AP2B1P63010 937 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 FUT7Q11130 342 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 MAP4K2Q12851 820 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 SMU1Q2TAY7 513 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 PLEKHN1Q494U1 663 aaPredicted RBP18.15■□□□□ 0.5
CLN3-225ENST00000566824 ZNF628Q5EBL2 1059 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 ABHD17BQ5VST6 288 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 TMEM198Q66K66 360 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 HSDL2Q6YN16 418 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 RIMKLAQ8IXN7 391 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 ARMC10Q8N2F6 343 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 SLC5A8Q8N695 610 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 ZNF615Q8N8J6 731 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 CTHRC1Q96CG8 243 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 THOC1Q96FV9 657 aaKnown RBP18.15■□□□□ 0.5
CLN3-225ENST00000566824 MAELQ96JY0 434 aaKnown RBP18.15■□□□□ 0.5
CLN3-225ENST00000566824 MARK4Q96L34 752 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 ZNF354BQ96LW1 612 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 BBS4Q96RK4 519 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 GLIPR2Q9H4G4 154 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 NOP53Q9NZM5 478 aaKnown RBP18.15■□□□□ 0.5
CLN3-225ENST00000566824 ATP6V1HQ9UI12 483 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 ENTPD4Q9Y227 616 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 EIF3LQ9Y262 564 aaKnown RBP18.15■□□□□ 0.5
CLN3-225ENST00000566824 DTX4Q9Y2E6 619 aa18.15■□□□□ 0.5
CLN3-225ENST00000566824 EML6Q6ZMW3 1958 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 TRPC5OSA6NMA1 111 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 SLCO1B7G3V0H7 640 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 WWP2O00308 870 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 SCAMP2O15127 329 aaKnown RBP18.14■□□□□ 0.49
CLN3-225ENST00000566824 TBX19O60806 448 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 CBX7O95931 251 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 LAMP1P11279 417 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 ASMTP46597 345 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 GUCY1A3Q02108 690 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 MEP1AQ16819 746 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 SLC6A19Q695T7 634 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 EPGNQ6UW88 154 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 ZNF551Q7Z340 670 aaPredicted RBP18.14■□□□□ 0.49
CLN3-225ENST00000566824 VWA5B2Q8N398 1253 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 Q8NA96 180 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 C7orf57Q8NEG2 295 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 PPCDCQ96CD2 204 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 AMDHD1Q96NU7 426 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 EBF4Q9BQW3 602 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 EPS8L2Q9H6S3 715 aa18.14■□□□□ 0.49
CLN3-225ENST00000566824 SH3BP4Q9P0V3 963 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms