RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 MAGEA5P43359 124 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 DNASE1L1P49184 302 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 DUSP2Q05923 314 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 DUSP8Q13202 625 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 NTRK2Q16620 822 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 CCNYL2Q5T2Q4 361 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 TTC19Q6DKK2 380 aaPredicted RBP13.7□□□□□ -0.22
CLN3-213ENST00000565047 SLC48A1Q6P1K1 146 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 PAGE2Q7Z2X7 111 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 CD163Q86VB7 1156 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 GSPT2Q8IYD1 628 aaKnown RBP13.7□□□□□ -0.22
CLN3-213ENST00000565047 RPRMLQ8N4K4 120 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 OR4K14Q8NGD5 310 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 SELENOMQ8WWX9 145 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 TP53INP1Q96A56 240 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 ZNF382Q96SR6 550 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 L2HGDHQ9H9P8 463 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 WDR41Q9HAD4 459 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 PRM3Q9NNZ6 103 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.7□□□□□ -0.22
CLN3-213ENST00000565047 TUBA8Q9NY65 449 aaPredicted RBP13.7□□□□□ -0.22
CLN3-213ENST00000565047 AHSPQ9NZD4 102 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 CNOT11Q9UKZ1 510 aaKnown RBP13.7□□□□□ -0.22
CLN3-213ENST00000565047 SNX6Q9UNH7 406 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 SLC12A4Q9UP95 1085 aa13.7□□□□□ -0.22
CLN3-213ENST00000565047 DCHS2Q6V1P9 2916 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 LRRC3CA6NJW4 275 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 G3V2L1 256 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 GOLGA8RI6L899 631 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 UBFD1O14562 309 aaKnown RBP13.69□□□□□ -0.22
CLN3-213ENST00000565047 OR10H2O60403 315 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 CDC40O60508 579 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLN3-213ENST00000565047 SUPT7LO94864 414 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 CLDN14O95500 239 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 GSTA1P08263 222 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 CELA3AP09093 270 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 RFPL3SP0C7P2 107 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 PYGBP11216 843 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 CPMP14384 443 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 ENDOUP21128 410 aaKnown RBP13.69□□□□□ -0.22
CLN3-213ENST00000565047 PIK3R1P27986 724 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 ARL1P40616 181 aaPredicted RBP13.69□□□□□ -0.22
CLN3-213ENST00000565047 KIR3DL1P43629 444 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 XKP51811 444 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 SMSP52788 366 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 RAE1P78406 368 aaKnown RBP13.69□□□□□ -0.22
CLN3-213ENST00000565047 MAP4K2Q12851 820 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 PRICKLE4Q2TBC4 344 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 TEX35Q5T0J7 233 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 SLC22A10Q63ZE4 541 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 RNF111Q6ZNA4 994 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 GK5Q6ZS86 529 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 FAM47EQ6ZV65 393 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 TRILQ7L0X0 811 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 SLC22A16Q86VW1 577 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 DND1Q8IYX4 353 aaKnown RBP13.69□□□□□ -0.22
CLN3-213ENST00000565047 FAM109AQ8N4B1 249 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 CDYL2Q8N8U2 506 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 SIMC1Q8NDZ2 872 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 OR10G3Q8NGC4 313 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 SLC22A8Q8TCC7 542 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 CTHRC1Q96CG8 243 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 HBEGFQ99075 208 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 TREX2Q9BQ50 279 aaPredicted RBP13.69□□□□□ -0.22
CLN3-213ENST00000565047 GSTO2Q9H4Y5 243 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 CHST11Q9NPF2 352 aa13.69□□□□□ -0.22
CLN3-213ENST00000565047 PSMC3IPQ9P2W1 217 aaPredicted RBP13.69□□□□□ -0.22
CLN3-213ENST00000565047 ZNF407Q9C0G0 2248 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 C1orf226A1L170 272 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 SERTM1A2A2V5 107 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 ANKRD33BA6NCL7 494 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 P04436 131 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 ATP1B1P05026 303 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 TPOP07202 933 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 HSD3B1P14060 373 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 PORP16435 677 aaPredicted RBP13.68□□□□□ -0.22
CLN3-213ENST00000565047 TAC1P20366 129 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 HSD3B2P26439 372 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 HTR6P50406 440 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 MAPK12P53778 367 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 TRA2BP62995 288 aaKnown RBP13.68□□□□□ -0.22
CLN3-213ENST00000565047 RASA2Q15283 850 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 GXYLT1Q4G148 440 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 SLC29A4Q7RTT9 530 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 GALNT12Q8IXK2 581 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 ZNF295-AS1Q8N0V1 137 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 LRRC25Q8N386 305 aaPredicted RBP13.68□□□□□ -0.22
CLN3-213ENST00000565047 FBXW8Q8N3Y1 598 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 C1orf52Q8N6N3 182 aaKnown RBP13.68□□□□□ -0.22
CLN3-213ENST00000565047 C17orf47Q8NEP4 570 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 OR7G1Q8NGA0 311 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 CNRIP1Q96F85 164 aaPredicted RBP13.68□□□□□ -0.22
CLN3-213ENST00000565047 ACPTQ9BZG2 426 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 OR10A5Q9H207 317 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 SIRT5Q9NXA8 310 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 MAT2BQ9NZL9 334 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 CNIH4Q9P003 139 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 HEY2Q9UBP5 337 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 VPS29Q9UBQ0 182 aa13.68□□□□□ -0.22
CLN3-213ENST00000565047 DTX4Q9Y2E6 619 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms