RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 OR6C76A6NM76 312 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 DVL2O14641 736 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 PGRMC2O15173 223 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 ACSL3O95573 720 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 AIFM1O95831 613 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 EPPINO95925 133 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 GSTA2P09210 222 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 FAM58BPP0C7Q3 252 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 SLC35E2P0CK97 266 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 NR2F6P10588 404 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 PIK3CGP48736 1102 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 PLTPP55058 493 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 PFKFB4Q16877 469 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 KRTAP21-3Q3LHN1 58 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 LIPJQ5W064 366 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 TMEM198Q66K66 360 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 CYP20A1Q6UW02 462 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 CCDC25Q86WR0 208 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 TGIF2LYQ8IUE0 185 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 CENPLQ8N0S6 344 aaPredicted RBP15.46■□□□□ 0.07
CLN3-211ENST00000564091 ZNF441Q8N8Z8 693 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 RMND5BQ96G75 393 aaPredicted RBP15.46■□□□□ 0.07
CLN3-211ENST00000564091 ZNF597Q96LX8 424 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 SH3GL2Q99962 352 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 DDX31Q9H8H2 851 aaKnown RBP15.46■□□□□ 0.07
CLN3-211ENST00000564091 LYARQ9NX58 379 aaKnown RBP15.46■□□□□ 0.07
CLN3-211ENST00000564091 ACOT9Q9Y305 439 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 SLC6A5Q9Y345 797 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 RNF11Q9Y3C5 154 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 TSC22D4Q9Y3Q8 395 aa15.46■□□□□ 0.07
CLN3-211ENST00000564091 HCFC1P51610 2035 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 NAV3Q8IVL0 2385 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 ANKRD33BA6NCL7 494 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 SYCE1LA8MT33 242 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 AHRRA9YTQ3 701 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 H0YIV9 168 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 GFAPP14136 432 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 KLK2P20151 261 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 CEACAM8P31997 349 aaPredicted RBP15.45■□□□□ 0.06
CLN3-211ENST00000564091 PHEXP78562 749 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 CRYZQ08257 329 aaKnown RBP15.45■□□□□ 0.06
CLN3-211ENST00000564091 SETDB1Q15047 1291 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 RPS6KA2Q15349 733 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 TRADDQ15628 312 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 POMZP3Q6PJE2 187 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 CDC20BQ86Y33 519 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 CHDHQ8NE62 594 aaPredicted RBP15.45■□□□□ 0.06
CLN3-211ENST00000564091 RNASE6Q93091 150 aaKnown RBP15.45■□□□□ 0.06
CLN3-211ENST00000564091 MRRFQ96E11 262 aaKnown RBP15.45■□□□□ 0.06
CLN3-211ENST00000564091 RILPQ96NA2 401 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 GNRHR2Q96P88 292 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 EPB41L4BQ9H329 900 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 WDR41Q9HAD4 459 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 CXorf21Q9HAI6 301 aa15.45■□□□□ 0.06
CLN3-211ENST00000564091 A6NNC1 897 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 TP53I11O14683 189 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 SIX3O95343 332 aaPredicted RBP15.44■□□□□ 0.06
CLN3-211ENST00000564091 C2P06681 752 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 CT62P0C5K7 136 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 DNASE1P24855 282 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 GALNSP34059 522 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 MAGEA4P43358 317 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 ASCL1P50553 236 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 CDK9P50750 372 aaKnown RBP15.44■□□□□ 0.06
CLN3-211ENST00000564091 AGFG1P52594 562 aaKnown RBP15.44■□□□□ 0.06
CLN3-211ENST00000564091 ARFIP1P53367 373 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 C2orf54Q08AI8 447 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 CUL3Q13618 768 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 GTF2H2Q13888 395 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 FLYWCH1Q4VC44 716 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 TBCELQ5QJ74 424 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 MROH9Q5TGP6 573 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 FNDC7Q5VTL7 733 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 HLA-DQA1Q5Y7H0 255 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 GTF2H2CQ6P1K8 395 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 MAATS1Q7Z4T9 603 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 GOLGA7Q7Z5G4 137 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 PRR22Q8IZ63 422 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 SPATA4Q8NEY3 305 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 GOT1L1Q8NHS2 421 aaPredicted RBP15.44■□□□□ 0.06
CLN3-211ENST00000564091 RHEBL1Q8TAI7 183 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 WDR20Q8TBZ3 569 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 SPPL2AQ8TCT8 520 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 FAM222BQ8WU58 562 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 REPS1Q96D71 796 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 CDK15Q96Q40 435 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 UBQLN3Q9H347 655 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 IPPKQ9H8X2 491 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 SNX15Q9NRS6 342 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 TEX10Q9NXF1 929 aaPredicted RBP15.44■□□□□ 0.06
CLN3-211ENST00000564091 CBLCQ9ULV8 474 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 CAMK2AQ9UQM7 478 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 NPFFR2Q9Y5X5 522 aa15.44■□□□□ 0.06
CLN3-211ENST00000564091 HMX2A2RU54 273 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 CAPN14A8MX76 684 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 SNX4O95219 450 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 IL2RAP01589 272 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 HPNP05981 417 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 STX2P32856 288 aa15.43■□□□□ 0.06
CLN3-211ENST00000564091 TIMP3P35625 211 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms