RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 SLC37A1P57057 533 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.41□□□□□ -0.42
CLK3-213ENST00000563842 CEP85LQ5SZL2 805 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 HLA-DQA1Q5Y7H0 255 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 SCIMPQ6UWF3 145 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 IL20RBQ6UXL0 311 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 LRIG3Q6UXM1 1119 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 GFRALQ6UXV0 394 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 DGAT2L6Q6ZPD8 337 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 RTL4Q6ZR62 310 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 RNF165Q6ZSG1 346 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.41□□□□□ -0.42
CLK3-213ENST00000563842 GOLM1Q8NBJ4 401 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 OR7G1Q8NGA0 311 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 UCN3Q969E3 161 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 TEP1Q99973 2627 aaKnown RBP12.41□□□□□ -0.42
CLK3-213ENST00000563842 STMN4Q9H169 189 aaPredicted RBP12.41□□□□□ -0.42
CLK3-213ENST00000563842 LIN28AQ9H9Z2 209 aaKnown RBP12.41□□□□□ -0.42
CLK3-213ENST00000563842 UTS2RQ9UKP6 389 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 DLGAP4Q9Y2H0 992 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 EXPH5Q8NEV8 1989 aa12.41□□□□□ -0.42
CLK3-213ENST00000563842 ICE1Q9Y2F5 2266 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 C2orf92A0A1B0GVN3 265 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 CAPN14A8MX76 684 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 TM9SF1O15321 606 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 TYROBPO43914 113 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 OR6B1O95007 311 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 FGF4P08620 206 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 IL3P08700 152 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 PRPH2P23942 346 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 SERPINB3P29508 390 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 FEN1P39748 380 aaKnown RBP12.4□□□□□ -0.42
CLK3-213ENST00000563842 SOX3P41225 446 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 PER3P56645 1201 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 RAE1P78406 368 aaKnown RBP12.4□□□□□ -0.42
CLK3-213ENST00000563842 PMP22Q01453 160 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 SRSF11Q05519 484 aaKnown RBP12.4□□□□□ -0.42
CLK3-213ENST00000563842 ZNF763Q0D2J5 394 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 FUT7Q11130 342 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 MAP4K2Q12851 820 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 C16orf47Q6ZP98 133 aaPredicted RBP12.4□□□□□ -0.42
CLK3-213ENST00000563842 ZNF227Q86WZ6 799 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 C9orf40Q8IXQ3 194 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 CLYBLQ8N0X4 340 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 TAGAPQ8N103 731 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 LRRC25Q8N386 305 aaPredicted RBP12.4□□□□□ -0.42
CLK3-213ENST00000563842 VWA5B2Q8N398 1253 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 PSD4Q8NDX1 1056 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 PPP1R14CQ8TAE6 165 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 C16orf78Q8WTQ4 265 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 SSC4DQ8WTU2 575 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 TP53INP1Q96A56 240 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 C11orf24Q96F05 449 aaPredicted RBP12.4□□□□□ -0.42
CLK3-213ENST00000563842 FRMD6Q96NE9 622 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 ZIM3Q96PE6 472 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 GAL3ST4Q96RP7 486 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 WWTR1Q9GZV5 400 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 CENPHQ9H3R5 247 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 PFDN4Q9NQP4 134 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 EHD3Q9NZN3 535 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 ENTPD4Q9Y227 616 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 SLC5A6Q9Y289 635 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 ACTL7BQ9Y614 415 aa12.4□□□□□ -0.42
CLK3-213ENST00000563842 FREM3P0C091 2139 aa12.4□□□□□ -0.43
CLK3-213ENST00000563842 ZNF407Q9C0G0 2248 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 A0A1B0GUH1 482 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 NPIPB8E9PQR5 432 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 HRKO00198 91 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 PEX1O43933 1283 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 SEC22BO75396 215 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 BCAS2O75934 225 aaPredicted RBP12.39□□□□□ -0.43
CLK3-213ENST00000563842 UNC5CO95185 931 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 P04436 131 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 BPGMP07738 259 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 ZNF24P17028 368 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 MST1P26927 711 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 MPIP34949 423 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 MEOX1P50221 254 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 NRG3P56975 720 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 C2orf80Q0P641 193 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 EBPQ15125 230 aaKnown RBP12.39□□□□□ -0.43
CLK3-213ENST00000563842 PRICKLE4Q2TBC4 344 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 ARL13AQ5H913 290 aaPredicted RBP12.39□□□□□ -0.43
CLK3-213ENST00000563842 CLEC6AQ6EIG7 209 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 BNC2Q6ZN30 1099 aaPredicted RBP12.39□□□□□ -0.43
CLK3-213ENST00000563842 NUDCD3Q8IVD9 361 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 SULF2Q8IWU5 870 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 CPSF7Q8N684 471 aaKnown RBP12.39□□□□□ -0.43
CLK3-213ENST00000563842 ERP27Q96DN0 273 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 PGM2Q96G03 612 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 GPR137Q96N19 417 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 MECRQ9BV79 373 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 EBPLQ9BY08 206 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 BRINP2Q9C0B6 783 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 OR10A5Q9H207 317 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 MIEF1Q9NQG6 463 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 SACM1LQ9NTJ5 587 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 C1orf109Q9NX04 203 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 OSGIN2Q9Y236 505 aa12.39□□□□□ -0.43
CLK3-213ENST00000563842 FIS1Q9Y3D6 152 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms