RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 SLC28A2O43868 658 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 GALR3O60755 368 aaPredicted RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 ERAL1O75616 437 aaKnown RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 UGT2B17O75795 530 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 CCNB2O95067 398 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 GADD45GO95257 159 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 GPR75O95800 540 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 GBAP04062 536 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 BCHEP06276 602 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 TFPTP0C1Z6 253 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 UBTFL6P0CB48 400 aaPredicted RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 SLC35E2P0CK97 266 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 HOXB1P14653 301 aaPredicted RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 CERS1P27544 350 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 KRT20P35900 424 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 ARL4DP49703 201 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 HLCSP50747 726 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 HSD17B7P56937 341 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 ARF3P61204 181 aaPredicted RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 KCNJ10P78508 379 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 ADARB1P78563 741 aaKnown RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 MC1RQ01726 317 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 APOFQ13790 326 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 DGCR6Q14129 220 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 MICAQ29983 383 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 MPEG1Q2M385 716 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 C6orf132Q5T0Z8 1188 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 BROXQ5VW32 411 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 LYSMD4Q5XG99 296 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 FAHD1Q6P587 224 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 DHRS4L2Q6PKH6 230 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 WDR74Q6RFH5 385 aaPredicted RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 ZNF793Q6ZN11 406 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 SZRD1Q7Z422 152 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 VN1R4Q7Z5H5 301 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 WDR5BQ86VZ2 330 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 BPHLQ86WA6 291 aaPredicted RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 OR2L13Q8N349 312 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 ZNF786Q8N393 782 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 NUP43Q8NFH3 380 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 LMX1AQ8TE12 382 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 SLC38A5Q8WUX1 472 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 TRUB1Q8WWH5 349 aaKnown RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 NAT6Q93015 286 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 ELP4Q96EB1 424 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 TMEM19Q96HH6 336 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 C7orf34Q96L11 122 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 HSPA12BQ96MM6 686 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 Q96MT0 163 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 ZNF285Q96NJ3 590 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 OR1F2PQ96R84 312 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 SLC29A1Q99808 456 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 ORAI3Q9BRQ5 295 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 RACGAP1Q9H0H5 632 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 NTN4Q9HB63 628 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 PAPOLBQ9NRJ5 636 aaKnown RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 SIRT3Q9NTG7 399 aaPredicted RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 NLGN3Q9NZ94 848 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 TRPC4Q9UBN4 977 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 KCND3Q9UK17 655 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 MRTO4Q9UKD2 239 aaKnown RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 FBXW2Q9UKT8 454 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 CES1P1Q9UKY3 287 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 RAB23Q9ULC3 237 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 SRPK3Q9UPE1 567 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 CLCA2Q9UQC9 943 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 PLEKHM1Q9Y4G2 1056 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 ATG4BQ9Y4P1 393 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 SNX5Q9Y5X3 404 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 GPC6Q9Y625 555 aaPredicted RBP7.09□□□□□ -1.27
VPS39-204ENST00000561818 V9GYQ6 96 aa7.09□□□□□ -1.27
VPS39-204ENST00000561818 HEATR5BQ9P2D3 2071 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 A0A0J9YVX5 310 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 LOC100130705A0A1B0GUX0 176 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 SH3D21A4FU49 640 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 KRBA1A5PL33 1030 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 FAM149AA5PLN7 773 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 RTCAO00442 366 aaKnown RBP7.08□□□□□ -1.28
VPS39-204ENST00000561818 HMGN4O00479 90 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 SCAMP1O15126 338 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 KIF1CO43896 1103 aaKnown RBP7.08□□□□□ -1.28
VPS39-204ENST00000561818 FMO6PO60774 539 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 SH3BGRLO75368 114 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 PIAS2O75928 621 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 MFN2O95140 757 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 ALPPP05187 535 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 ALOX5P09917 674 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 CPMP14384 443 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 CD72P21854 359 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 XCR1P46094 333 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 KCNJ5P48544 419 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 XKP51811 444 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 LIM2P55344 173 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 CDC42P60953 191 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 SPIBQ01892 262 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 FZD5Q13467 585 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 SQSTM1Q13501 440 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 PRTGQ2VWP7 1150 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 ZNF691Q5VV52 312 aa7.08□□□□□ -1.28
VPS39-204ENST00000561818 MLIPQ5VWP3 458 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms