RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 MDS2Q8NDY4 140 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 OR8K3Q8NH51 312 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.7□□□□□ -1.02
LDLR-211ENST00000560173 CPT1CQ8TCG5 803 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 MGARPQ8TDB4 240 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 DOK4Q8TEW6 326 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 THAP3Q8WTV1 239 aaPredicted RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 RIT1Q92963 219 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 KLHL29Q96CT2 875 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 SENP5Q96HI0 755 aaPredicted RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 ART5Q96L15 291 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 PAIP2Q9BPZ3 127 aaKnown RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 UTP23Q9BRU9 249 aaKnown RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 CNPPD1Q9BV87 410 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.7□□□□□ -1.02
LDLR-211ENST00000560173 ZNF395Q9H8N7 513 aaPredicted RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 CXorf21Q9HAI6 301 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 MYNNQ9NPC7 610 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 C1orf109Q9NX04 203 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 EHD3Q9NZN3 535 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 COPS7AQ9UBW8 275 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 ZDHHC2Q9UIJ5 367 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 ERVK-19Q9WJR5 959 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 WBP11Q9Y2W2 641 aaKnown RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 POLR3HQ9Y535 204 aaPredicted RBP8.7□□□□□ -1.02
LDLR-211ENST00000560173 SHANK1Q9Y566 2161 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 POLEQ07864 2286 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 MYO9AB2RTY4 2548 aa8.7□□□□□ -1.02
LDLR-211ENST00000560173 TEP1Q99973 2627 aaKnown RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 ERICH4A6NGS2 130 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 CDK2AP1O14519 115 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 FCHO1O14526 889 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 KLF11O14901 512 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 PRAMEF2O60811 474 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 SEC22BO75396 215 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 SKAP2O75563 359 aaPredicted RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 ERAL1O75616 437 aaKnown RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 SNUPNO95149 360 aaKnown RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 CLPSP04118 112 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 ATP1B1P05026 303 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 CT62P0C5K7 136 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 GP1BBP13224 206 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 PORP16435 677 aaPredicted RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 CSNK2A2P19784 350 aaPredicted RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 DDCP20711 480 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 DRD4P21917 467 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 TACR1P25103 407 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 FEN1P39748 380 aaKnown RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 CD96P40200 585 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 ST13P50502 369 aaKnown RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 HLCSP50747 726 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 HK2P52789 917 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 SEC24CP53992 1094 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 RPL38P63173 70 aaKnown RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 RNF4P78317 190 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 FOXK1P85037 733 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 DUSP2Q05923 314 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 BST1Q10588 318 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 ZNF267Q14586 743 aaPredicted RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 HEPACAMQ14CZ8 416 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 OR1C1Q15619 314 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 FAM71E1Q6IPT2 247 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 RPUSD3Q6P087 351 aaKnown RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 C16orf47Q6ZP98 133 aaPredicted RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 IKBIPQ70UQ0 350 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 YTHDF3Q7Z739 585 aaKnown RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 GALNT12Q8IXK2 581 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 C9orf40Q8IXQ3 194 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 CDC26Q8NHZ8 85 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 MIB2Q96AX9 1013 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 CNRIP1Q96F85 164 aaPredicted RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 ZNF681Q96N22 645 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 SIGLEC12Q96PQ1 595 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 SORT1Q99523 831 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 CCT7Q99832 543 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 C20orf27Q9GZN8 174 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 TRIM45Q9H8W5 580 aaPredicted RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.69□□□□□ -1.021e-6■■□□□ 12.8
LDLR-211ENST00000560173 ANKRD10Q9NXR5 420 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 MYOTQ9UBF9 498 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 GIMAP2Q9UG22 337 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 HAO1Q9UJM8 370 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 UTS2RQ9UKP6 389 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 PSME2Q9UL46 239 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 EXO1Q9UQ84 846 aaKnown RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 NTNG1Q9Y2I2 539 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.69□□□□□ -1.02
LDLR-211ENST00000560173 RAP2CQ9Y3L5 183 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 SVILO95425 2214 aa8.69□□□□□ -1.02
LDLR-211ENST00000560173 SPTAN1Q13813 2472 aaKnown RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 OR6C76A6NM76 312 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 TCP11X1B4DZS4 312 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 ITGA10O75578 1167 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 OR2J2O76002 312 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 NEURL1O76050 574 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 JUNP05412 331 aaKnown RBP8.68□□□□□ -1.02
LDLR-211ENST00000560173 TROVE2P10155 538 aaKnown RBP eCLIP8.68□□□□□ -1.02
LDLR-211ENST00000560173 SDC1P18827 310 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 NT5EP21589 574 aa8.68□□□□□ -1.02
LDLR-211ENST00000560173 SSTR4P31391 388 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 122.4 ms