RNA–Protein interactions for RNA: ENST00000557703.5

SHMT2-234, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 542 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-234ENST00000557703 NCLNQ969V3 563 aa12.75□□□□□ -0.37
SHMT2-234ENST00000557703 TP53INP1Q96A56 240 aa12.75□□□□□ -0.37
SHMT2-234ENST00000557703 PPCDCQ96CD2 204 aa12.75□□□□□ -0.37
SHMT2-234ENST00000557703 CNRIP1Q96F85 164 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-234ENST00000557703 BBS4Q96RK4 519 aa12.75□□□□□ -0.37
SHMT2-234ENST00000557703 TRIM45Q9H8W5 580 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-234ENST00000557703 YARS2Q9Y2Z4 477 aaKnown RBP12.75□□□□□ -0.37
SHMT2-234ENST00000557703 TTC36A6NLP5 189 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 EIF4E1BA6NMX2 242 aaKnown RBP12.74□□□□□ -0.37
SHMT2-234ENST00000557703 A8MUA0 341 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 PLOD2O00469 737 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 SDHDO14521 159 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 IDO1P14902 403 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 TACR1P25103 407 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 TRHRP34981 398 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-234ENST00000557703 FRKP42685 505 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-234ENST00000557703 RNF4P78317 190 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 ZNF267Q14586 743 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-234ENST00000557703 PRICKLE4Q2TBC4 344 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 B3GNTL1Q67FW5 361 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-234ENST00000557703 EPGNQ6UW88 154 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 RNF111Q6ZNA4 994 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 ACAD11Q709F0 780 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 SLC29A4Q7RTT9 530 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 LIX1Q8N485 282 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 TEX19Q8NA77 164 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 GLB1L3Q8NCI6 653 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-234ENST00000557703 VPS37AQ8NEZ2 397 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 TESCQ96BS2 214 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 COQ8BQ96D53 544 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 EGLN2Q96KS0 407 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 TSSK3Q96PN8 268 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 MESP1Q9BRJ9 268 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 CCDC28BQ9BUN5 200 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 OR8D2Q9GZM6 311 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 PTGFRNQ9P2B2 879 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 PRODH2Q9UF12 536 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 ZNF639Q9UID6 485 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 USH1CQ9Y6N9 552 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 KALRNO60229 2985 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 PCSK5Q92824 1860 aa12.74□□□□□ -0.37
SHMT2-234ENST00000557703 RP1L1Q8IWN7 2480 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 TRBV11-1A0A0K0K1C0 115 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 GABRR3A8MPY1 467 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 ZNF195O14628 629 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 SCAMP2O15127 329 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 PRAMEF2O60811 474 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 EDF1O60869 148 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 PRKRAO75569 313 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 JUNP05412 331 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 KITP10721 976 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 NT5EP21589 574 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 FEN1P39748 380 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 CASRP41180 1078 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 MRPL19P49406 292 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 SLC37A1P57057 533 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 MLF1P58340 268 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 ID2Q02363 134 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 TLR1Q15399 786 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 LSM12Q3MHD2 195 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 CPTPQ5TA50 214 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 Q6ZS92 163 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 RIMKLAQ8IXN7 391 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 CCDC116Q8IYX3 515 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 OR8J2Q8NGG1 315 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 SUN3Q8TAQ9 357 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 EXOSC8Q96B26 276 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 PPWD1Q96BP3 646 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 BRINP2Q9C0B6 783 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 BHLHE41Q9C0J9 482 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 SLCO1B3Q9NPD5 702 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 MYOTQ9UBF9 498 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 BAIAP2L1Q9UHR4 511 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 EXO1Q9UQ84 846 aaKnown RBP12.73□□□□□ -0.37
SHMT2-234ENST00000557703 B3GNT3Q9Y2A9 372 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 TP53TG5Q9Y2B4 290 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 BOD1L1Q8NFC6 3051 aa12.73□□□□□ -0.37
SHMT2-234ENST00000557703 TRAV17A0A0B4J275 112 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 WASHC1A8K0Z3 465 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 A8MUI8 341 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 CAPN14A8MX76 684 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 POLR3GO15318 223 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-234ENST00000557703 PDPK1O15530 556 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 COQ9O75208 318 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 G6PDP11413 515 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 S1PR1P21453 382 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 EPHA3P29320 983 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 MDH1P40925 334 aaKnown RBP12.72□□□□□ -0.37
SHMT2-234ENST00000557703 MANFP55145 182 aaKnown RBP12.72□□□□□ -0.37
SHMT2-234ENST00000557703 LY6DQ14210 128 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 RPS6KA2Q15349 733 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 INAQ16352 499 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 ANXA8L1Q5VT79 327 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 METTL21CQ5VZV1 264 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 RPUSD3Q6P087 351 aaKnown RBP12.72□□□□□ -0.37
SHMT2-234ENST00000557703 SIRT6Q8N6T7 355 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 CDC26Q8NHZ8 85 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 PSMA8Q8TAA3 256 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 PNPLA2Q96AD5 504 aa12.72□□□□□ -0.37
SHMT2-234ENST00000557703 AMDHD1Q96NU7 426 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms