RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	ZPLD1	Q8TCW7	415 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	SMPDL3B	Q92485	455 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	RIT1	Q92963	219 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	ABTB1	Q969K4	478 aa	Predicted RBP	11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	CMTM7	Q96FZ5	175 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	PELO	Q9BRX2	385 aa	Known RBP	11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	UBQLN3	Q9H347	655 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	POPDC3	Q9HBV1	291 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	TEX264	Q9Y6I9	313 aa		11.58	□□□□□ -0.56
SHMT2-223	ENST00000556689	C2orf92	A0A1B0GVN3	265 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	SH3D21	A4FU49	640 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	CCNT2	O60583	730 aa	Known RBP	11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	GPR75	O95800	540 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	PCNA	P12004	261 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	EPOR	P19235	508 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	MASP1	P48740	699 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	FBXW4	P57775	412 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	PCDH1	Q08174	1060 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	EBP	Q15125	230 aa	Known RBP	11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	SPRED3	Q2MJR0	410 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	EIPR1	Q53HC9	387 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	KHDRBS2	Q5VWX1	349 aa	Known RBP	11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	MED27	Q6P2C8	311 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	TMEM64	Q6YI46	380 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	CAPN12	Q6ZSI9	719 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	LAS2	Q8IYD9	372 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	LRRC75A-AS1	Q8N1F1	130 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	SPATA6L	Q8N4H0	392 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	CEP112	Q8N8E3	955 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	SPPL2A	Q8TCT8	520 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	ACTRT1	Q8TDG2	376 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	TP53INP1	Q96A56	240 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	RGMA	Q96B86	450 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	RILP	Q96NA2	401 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	SECISBP2	Q96T21	854 aa	Known RBP	11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	PIP5K1A	Q99755	562 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	SORBS1	Q9BX66	1292 aa	Known RBP	11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	UGT2B28	Q9BY64	529 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	ANGPTL4	Q9BY76	406 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	OR51B5	Q9H339	312 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	SNX15	Q9NRS6	342 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	MOCS1	Q9NZB8	636 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	CD274	Q9NZQ7	290 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	NDRG3	Q9UGV2	375 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	PHF11	Q9UIL8	331 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	PTBP2	Q9UKA9	531 aa	Known RBP	11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	EIF3L	Q9Y262	564 aa	Known RBP	11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	C15orf41	Q9Y2V0	281 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	NPFFR2	Q9Y5X5	522 aa		11.57	□□□□□ -0.56
SHMT2-223	ENST00000556689	ARHGAP21	Q5T5U3	1957 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689		A0A1W2PPR1	153 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689		H7C1Q1	480 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	SMPD2	O60906	423 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	CCDC166	P0CW27	439 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	CYP4B1	P13584	511 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	IVD	P26440	423 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	PCSK6	P29122	969 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	SERPINB1	P30740	379 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	GALNS	P34059	522 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	BUD31	P41223	144 aa	Predicted RBP	11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	CPA2	P48052	419 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	RPP38	P78345	283 aa	Known RBP	11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	POU4F1	Q01851	419 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	TNFRSF17	Q02223	184 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	ILF2	Q12905	390 aa	Known RBP	11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	MORF4L2	Q15014	288 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	RPS6KA2	Q15349	733 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	WIPI1	Q5MNZ9	446 aa	Predicted RBP	11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689		Q5PR19	223 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	FNDC7	Q5VTL7	733 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	HLA-DQA1	Q5Y7H0	255 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	BICRAL	Q6AI39	1079 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	LUZP2	Q86TE4	346 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	ANKMY2	Q8IV38	441 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	CIART	Q8N365	385 aa	Predicted RBP	11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	VWA5B2	Q8N398	1253 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	C9orf106	Q8NAJ2	232 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	OR7G3	Q8NG95	312 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	PIGT	Q969N2	578 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	COX4I2	Q96KJ9	171 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	CENPK	Q9BS16	269 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	BDH2	Q9BUT1	245 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	CD244	Q9BZW8	370 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	RHOJ	Q9H4E5	214 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	NSMCE4A	Q9NXX6	385 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	GALNT8	Q9NY28	637 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	FETUB	Q9UGM5	382 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	ADGRE2	Q9UHX3	823 aa		11.56	□□□□□ -0.56
SHMT2-223	ENST00000556689	WASHC1	A8K0Z3	465 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	CCDC188	H7C350	402 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	CDH16	O75309	829 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	PRKRA	O75569	313 aa	Known RBP	11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	RCBTB2	O95199	551 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	ACTL6A	O96019	429 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	CLPS	P04118	112 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	S100B	P04271	92 aa	Predicted RBP	11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	CPN1	P15169	458 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	GCK	P35557	465 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	CASP3	P42574	277 aa		11.55	□□□□□ -0.56
SHMT2-223	ENST00000556689	TMED10	P49755	219 aa	Known RBP	11.55	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms