RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 SMURF2Q9HAU4 748 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 BCL2L10Q9HD36 194 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 COMMD3-BMI1R4GMX3 469 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 CCDC88CQ9P219 2028 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 hCG_2039718K7EN88 272 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 BCAT2O15382 392 aaPredicted RBP8.37□□□□□ -1.07
TDP1-210ENST00000554976 SUV39H1O43463 412 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 ASNA1O43681 348 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 OPN1SWP03999 348 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 ATP1B1P05026 303 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 ITGAMP11215 1152 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 TYRP1P17643 537 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 NTSP30990 170 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 PTGER1P34995 402 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 PIGAP37287 484 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 RXRGP48443 463 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 AFF3P51826 1226 aaKnown RBP8.37□□□□□ -1.07
TDP1-210ENST00000554976 IGLV3-21P80748 117 aaPredicted RBP8.37□□□□□ -1.07
TDP1-210ENST00000554976 LTB4RQ15722 352 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 DEFB133Q30KQ1 61 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 PMS2CLQ68D20 193 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 TSSK4Q6SA08 328 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 CSNK1A1LQ8N752 337 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 OR4D11Q8NGI4 311 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 OR9A2Q8NGT5 310 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 ZCCHC10Q8TBK6 192 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 ANKRD9Q96BM1 317 aaPredicted RBP8.37□□□□□ -1.07
TDP1-210ENST00000554976 CTHRC1Q96CG8 243 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 MAP3K3Q99759 626 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 SOX17Q9H6I2 414 aaPredicted RBP8.37□□□□□ -1.07
TDP1-210ENST00000554976 PDP2Q9P2J9 529 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 ACAD8Q9UKU7 415 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 NAALAD2Q9Y3Q0 740 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 ZNF451Q9Y4E5 1061 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 SNX8Q9Y5X2 465 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 KCNE3Q9Y6H6 103 aa8.37□□□□□ -1.07
TDP1-210ENST00000554976 MN1Q10571 1320 aaPredicted RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 MYOCOSA0A1B0GUC4 107 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 TGFBR3LH3BV60 316 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 FFAR1O14842 300 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 B3GALT2O43825 422 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 BCHEP06276 602 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 PROS1P07225 676 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 CHRM4P08173 479 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 C8orf89P0DMQ9 161 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 AQP1P29972 269 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 CD97P48960 835 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 HMGA2P52926 109 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 DUSP7Q16829 419 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 PRAMEF8Q5VWM4 474 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 PRAMEF7Q5VXH5 474 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 TNFAIP8L2Q6P589 184 aaPredicted RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 TMEM107Q6UX40 140 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 MED25Q71SY5 747 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 PATL1Q86TB9 770 aaKnown RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 ZNF554Q86TJ5 538 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 CCDC116Q8IYX3 515 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 SIMC1Q8NDZ2 872 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 OR7G2Q8NG99 324 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 OR5T3Q8NGG3 340 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 OR5D16Q8NGK9 328 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 TCTN2Q96GX1 697 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 SLC35G5Q96KT7 338 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 ZNF300Q96RE9 604 aaPredicted RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 RBM4BQ9BQ04 359 aaKnown RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 RBM4Q9BWF3 364 aaKnown RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 FAM118AQ9NWS6 357 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 ADPRHL2Q9NX46 363 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 RHBDL2Q9NX52 303 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 THUMPD1Q9NXG2 353 aaKnown RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 IFT80Q9P2H3 777 aaPredicted RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 THEGQ9P2T0 379 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 ANGPT4Q9Y264 503 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 CHST2Q9Y4C5 530 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 LYVE1Q9Y5Y7 322 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 ABCA7Q8IZY2 2146 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 MYO15AQ9UKN7 3530 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 IGHV5-51A0A0C4DH38 117 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 URADA6NGE7 173 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 SLC9B1P1A6NJY1 282 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 M0QX08 132 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 SLC16A6O15403 523 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 EMC8O43402 210 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 HYAL3O43820 417 aaPredicted RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 DIRAS1O95057 198 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 PGM3O95394 542 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 FHP07954 510 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 OR12D1P0DN82 309 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 THRBP10828 461 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 CSNK2A2P19784 350 aaPredicted RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 TNFRSF1BP20333 461 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 FPR1P21462 350 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 MATN1P21941 496 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 DNAJA1P31689 397 aaKnown RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 FEN1P39748 380 aaKnown RBP8.36□□□□□ -1.07
TDP1-210ENST00000554976 MC3RP41968 323 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 GFERP55789 205 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 RAB38P57729 211 aa8.36□□□□□ -1.07
TDP1-210ENST00000554976 VSX2P58304 361 aaPredicted RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms