RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 HLA-DMAP28067 261 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 TNFSF8P32971 234 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 ARHGDIAP52565 204 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 CLDN6P56747 220 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 SNRPD2P62316 118 aaKnown RBP7.28□□□□□ -1.24
LIMA1-216ENST00000552909 SCN1BQ07699 218 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 FOXC1Q12948 553 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 PWP1Q13610 501 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 PLA2G4EQ3MJ16 856 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 SOWAHCQ53LP3 525 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-216ENST00000552909 HENMT1Q5T8I9 393 aaKnown RBP7.28□□□□□ -1.24
LIMA1-216ENST00000552909 AFTPHQ6ULP2 937 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 CDH24Q86UP0 819 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 RDH10Q8IZV5 341 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 VWA5B2Q8N398 1253 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 CDYL2Q8N8U2 506 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 TTC29Q8NA56 475 aaPredicted RBP7.28□□□□□ -1.24
LIMA1-216ENST00000552909 OR4M2Q8NGB6 313 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 GPR150Q8NGU9 434 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 OR4C6Q8NH72 309 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 ASB15Q8WXK1 588 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 TMEM168Q9H0V1 697 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 C3orf14Q9HBI5 128 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 IL26Q9NPH9 171 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 TNFRSF10DQ9UBN6 386 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 ATPIF1Q9UII2 106 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 NDRG4Q9ULP0 352 aaKnown RBP7.28□□□□□ -1.24
LIMA1-216ENST00000552909 SNX8Q9Y5X2 465 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 U3KQA8 63 aa7.28□□□□□ -1.24
LIMA1-216ENST00000552909 A0A1W2PQ09 198 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 PRSS38A1L453 326 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 LINC00862A6NCI5 91 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 I3L521 148 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 TNFSF14O43557 240 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 HYAL3O43820 417 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-216ENST00000552909 TRIM3O75382 744 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-216ENST00000552909 SEC22BO75396 215 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 NDUFS3O75489 264 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 LDOC1O95751 146 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-216ENST00000552909 HOXC4P09017 264 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-216ENST00000552909 KIAA1024LP59773 190 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 ERVK-8P63133 956 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 DAB2P98082 770 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 HYAL2Q12891 473 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 LCP2Q13094 533 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 ASAH1Q13510 395 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 PCM1Q15154 2024 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 TAB1Q15750 504 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 STK11Q15831 433 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 BAK1Q16611 211 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 PFKFB4Q16877 469 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF648Q5T619 568 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-216ENST00000552909 KIAA1614Q5VZ46 1190 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 CPZQ66K79 652 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 DOK6Q6PKX4 331 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 FAM151BQ6UXP7 276 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 PLEKHM3Q6ZWE6 761 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 HDDC2Q7Z4H3 204 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 P3H2Q8IVL5 708 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 TRIM48Q8IWZ4 208 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 PIANPQ8IYJ0 282 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 NRSN1Q8IZ57 195 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 CYP4Z2PQ8N1L4 340 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 GALNT11Q8NCW6 608 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 OR52E4Q8NGH9 312 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 PROKR1Q8TCW9 393 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 ZNF675Q8TD23 568 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 DNAJA4Q8WW22 397 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-216ENST00000552909 GIMAP1Q8WWP7 306 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 MYDGFQ969H8 173 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 PTERQ96BW5 349 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 APOLD1Q96LR9 279 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 NSUN5Q96P11 429 aaKnown RBP7.27□□□□□ -1.24
LIMA1-216ENST00000552909 CDC6Q99741 560 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 TRAF4Q9BUZ4 470 aaPredicted RBP7.27□□□□□ -1.24
LIMA1-216ENST00000552909 RNF121Q9H920 327 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 SMURF1Q9HCE7 757 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 ING3Q9NXR8 418 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 FTSJ1Q9UET6 329 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 PLEKHM1Q9Y4G2 1056 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 HSPB11Q9Y547 144 aa7.27□□□□□ -1.24
LIMA1-216ENST00000552909 PTPRBP23467 1997 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 COL5A1P20908 1838 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 UNC13CQ8NB66 2214 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 ANKRD11Q6UB99 2663 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 A0A096LPI6 279 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 UBA6A0AVT1 1052 aaPredicted RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 ELOVL7A1L3X0 281 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 LRRC14BA6NHZ5 514 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 B4DXG7 233 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 LMO7DNF2Z398 122 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 H3BM21 787 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 H3BUI4 141 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 H7C0S8 307 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 TSPAN4O14817 238 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 RGS5O15539 181 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 KIAA0513O60268 411 aa7.27□□□□□ -1.25
LIMA1-216ENST00000552909 ERN1O75460 977 aaKnown RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 WBP4O75554 376 aaKnown RBP7.27□□□□□ -1.25
LIMA1-216ENST00000552909 DKK1O94907 266 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms