RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 HOXC8P31273 242 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 IRS1P35568 1242 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 EVX1P49640 407 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PRIM2P49643 509 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 CLCNKAP51800 687 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 EPHA5P54756 1037 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 CDK6Q00534 326 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 RGS1Q08116 209 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ACSM2AQ08AH3 577 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 GPR176Q14439 515 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MBTPS1Q14703 1052 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 SNAPC1Q16533 368 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF284Q2VY69 593 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 SYT14P1Q58G82 188 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 RNASE12Q5GAN4 147 aaKnown RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 XKR6Q5GH73 641 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ACSM2BQ68CK6 577 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 CCSAPQ6IQ19 270 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MTFR2Q6P444 385 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 LIPIQ6XZB0 460 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF767PQ75MW2 155 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 DNAJB7Q7Z6W7 309 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 KIAA0907Q7Z7F0 614 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 C11orf96Q7Z7L8 435 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 LHFPL3Q86UP9 236 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 APCDD1Q8J025 514 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF655Q8N720 491 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 HJURPQ8NCD3 748 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 GALNT11Q8NCW6 608 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 C19orf18Q8NEA5 215 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 CEP76Q8TAP6 659 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 SLC7A13Q8TCU3 470 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 APOBEC4Q8WW27 367 aaKnown RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 RAB8BQ92930 207 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 RIT1Q92963 219 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 WDR89Q96FK6 387 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 OTUB1Q96FW1 271 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 GPR137Q96N19 417 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 NRTNQ99748 197 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ATF6BQ99941 703 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 TMED9Q9BVK6 235 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MND1Q9BWT6 205 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PLA2G12AQ9BZM1 189 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 RNF32Q9H0A6 362 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 RDH14Q9HBH5 336 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 BEX1Q9HBH7 125 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ING3Q9NXR8 418 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 RWDD3Q9Y3V2 267 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ENPP4Q9Y6X5 453 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 CHD7Q9P2D1 2997 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PLXNB3Q9ULL4 1909 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 LOC105369274A0A096LPK9 316 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 A0A1W2PRU2 124 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 LINC00862A6NCI5 91 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PRR23AA6NEV1 266 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MGAT4DA6NG13 374 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 NEDD8-MDP1E9PL57 170 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 KPNA3O00505 521 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 SIGLEC5O15389 551 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 TOXO94900 526 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PIPP12273 146 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 CPEP16870 476 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ELK1P19419 428 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PTNP21246 168 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PTGER1P34995 402 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PPM1FP49593 454 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MAP2K6P52564 334 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MEF2AQ02078 507 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 SIGLEC14Q08ET2 396 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MLLT11Q13015 90 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MAB21L1Q13394 359 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PIN1Q13526 163 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 TRIM71Q2Q1W2 868 aaKnown RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 LGALSLQ3ZCW2 172 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 KLHL22Q53GT1 634 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 FAM27D1Q5T7N8 215 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 TRIQKQ629K1 86 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 VASNQ6EMK4 673 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 TCTN3Q6NUS6 607 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MACC1Q6ZN28 852 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 KCTD20Q7Z5Y7 419 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 KIF18BQ86Y91 864 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 OR4N4Q8N0Y3 316 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 NXPE1Q8N323 547 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 CLDN22Q8N7P3 220 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ZBTB44Q8NCP5 570 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 PROKR2Q8NFJ6 384 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 CSGALNACT1Q8TDX6 532 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ZNF431Q8TF32 576 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 CHTF18Q8WVB6 975 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ASB11Q8WXH4 323 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 SCAMP4Q969E2 229 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 LRR1Q96L50 414 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 DEFB118Q96PH6 123 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 MAPKAP1Q9BPZ7 522 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 TRAF4Q9BUZ4 470 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-214ENST00000552783 SAP130Q9H0E3 1048 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 ABCG4Q9H172 646 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 TBC1D17Q9HA65 648 aa4.6□□□□□ -1.67
LIMA1-214ENST00000552783 C12orf10Q9HB07 376 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms