RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	PIGH	Q14442	188 aa	Predicted RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	MAPRE2	Q15555	327 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	SNCB	Q16143	134 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	RBBP7	Q16576	425 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	SGSM1	Q2NKQ1	1148 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	SBK1	Q52WX2	424 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	CEP78	Q5JTW2	689 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	THEM4	Q5T1C6	240 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	LIPN	Q5VXI9	398 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	GGNBP1	Q5YKI7	109 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	CAPN13	Q6MZZ7	669 aa	Predicted RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	ANKRD54	Q6NXT1	300 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	METTL2B	Q6P1Q9	378 aa	Known RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	KCNIP4	Q6PIL6	250 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	DHRS13	Q6UX07	377 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	WASH2P	Q6VEQ5	465 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	ARHGAP22	Q7Z5H3	698 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	SCD5	Q86SK9	330 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	PLCZ1	Q86YW0	608 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	FAM114A1	Q8IWE2	563 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	TDH	Q8IZJ6	230 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	PROKR2	Q8NFJ6	384 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	ABHD11	Q8NFV4	315 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	UBA3	Q8TBC4	463 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	ZNF398	Q8TD17	642 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	ARNTL2	Q8WYA1	636 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	NRGN	Q92686	78 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	TANK	Q92844	425 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	RPL3L	Q92901	407 aa	Known RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	PPP1R16A	Q96I34	528 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	METTL2A	Q96IZ6	378 aa	Known RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	VSTM2L	Q96N03	204 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	TSSK2	Q96PF2	358 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	KRT12	Q99456	494 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	PRMT1	Q99873	361 aa	Known RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	LMF2	Q9BU23	707 aa	Known RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	C20orf24	Q9BUV8	137 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	RBM24	Q9BX46	236 aa	Known RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	ACTL8	Q9H568	366 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	MTHFD2L	Q9H903	347 aa	Predicted RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	ZNF302	Q9NR11	478 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	PHPT1	Q9NRX4	125 aa	Predicted RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	CISD1	Q9NZ45	108 aa	Known RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	ADAM22	Q9P0K1	906 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	LCMT1	Q9UIC8	334 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	ACSL5	Q9ULC5	683 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	RBMX2	Q9Y388	322 aa	Known RBP	3.87	□□□□□ -1.79
USP44-208	ENST00000552440	NFE2L3	Q9Y4A8	694 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	SALL1	Q9NSC2	1324 aa		3.87	□□□□□ -1.79
USP44-208	ENST00000552440	C1orf232	A0A0U1RR37	186 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	CXorf65	A6NEN9	183 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440		A8MU76	341 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440		A8MXQ7	604 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	CHEK1	O14757	476 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	CHUK	O15111	745 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	RNMT	O43148	476 aa	Known RBP	3.86	□□□□□ -1.79
USP44-208	ENST00000552440	MSI1	O43347	362 aa	Known RBP	3.86	□□□□□ -1.79
USP44-208	ENST00000552440	JAK2	O60674	1132 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	ERLIN2	O94905	339 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	OR2F2	O95006	317 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	TFPI	P10646	304 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	NCK1	P16333	377 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	LAP3	P28838	519 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	CD40LG	P29965	261 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	CHRNA5	P30532	468 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	SSTR1	P30872	391 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	PPP1R2	P41236	205 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	GPR12	P47775	334 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	NDST2	P52849	883 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	COPB1	P53618	953 aa	Known RBP	3.86	□□□□□ -1.79
USP44-208	ENST00000552440	RAD23B	P54727	409 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	CYP4F2	P78329	520 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	CSNK1G2	P78368	415 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	PAX5	Q02548	391 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	BST2	Q10589	180 aa	Known RBP	3.86	□□□□□ -1.79
USP44-208	ENST00000552440	TROAP	Q12815	778 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	CALCOCO2	Q13137	446 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	FADD	Q13158	208 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	MICB	Q29980	383 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	UGT3A2	Q3SY77	523 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	KIAA0895L	Q68EN5	471 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	LCN10	Q6JVE6	187 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	PPP1R2P3	Q6NXS1	205 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	3.86	□□□□□ -1.79
USP44-208	ENST00000552440	NLRP9	Q7RTR0	991 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	ANKRD33	Q7Z3H0	272 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	WDR53	Q7Z5U6	358 aa	Predicted RBP	3.86	□□□□□ -1.79
USP44-208	ENST00000552440	GPR141	Q7Z602	305 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	TMC8	Q8IU68	726 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	SPATA6L	Q8N4H0	392 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	BMPER	Q8N8U9	685 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	MAB21L3	Q8N8X9	362 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	GATS	Q8NAP1	163 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	SCCPDH	Q8NBX0	429 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	ICA1L	Q8NDH6	482 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	OR5T3	Q8NGG3	340 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	OR10Q1	Q8NGQ4	319 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	OR1L4	Q8NGR5	311 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	MARCH1	Q8TCQ1	289 aa		3.86	□□□□□ -1.79
USP44-208	ENST00000552440	SSMEM1	Q8WWF3	244 aa		3.86	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 88 ms