RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 NKX2-5P52952 324 aaPredicted RBP14.89□□□□□ -0.03
CUX1-211ENST00000546411 LRRC17Q8N6Y2 441 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 B3GNT7Q8NFL0 401 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 SH3YL1Q96HL8 342 aaPredicted RBP14.89□□□□□ -0.03
CUX1-211ENST00000546411 TMEM138Q9NPI0 162 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 NEU3Q9UQ49 428 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 AKAP8O43823 692 aaKnown RBP14.89□□□□□ -0.03
CUX1-211ENST00000546411 KHDRBS3O75525 346 aaKnown RBP14.89□□□□□ -0.03
CUX1-211ENST00000546411 FHP07954 510 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 GCGRP47871 477 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 TAS2R38P59533 333 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 NDUFA9Q16795 377 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 FAM78AQ5JUQ0 283 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 ZNF544Q6NX49 715 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 CYHR1Q6ZMK1 362 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 MSANTD1Q6ZTZ1 278 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 HORMAD2Q8N7B1 307 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 OR52P1PQ8NH57 321 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 NXPE3Q969Y0 559 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 SLC25A36Q96CQ1 311 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 TMEM45AQ9NWC5 275 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 MED16Q9Y2X0 877 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 FAAHO00519 579 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 SLC2A2P11168 524 aaPredicted RBP14.89□□□□□ -0.03
CUX1-211ENST00000546411 JAZF1Q86VZ6 243 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 SP140LQ9H930 580 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 HSFX1Q9UBD0 423 aa14.89□□□□□ -0.03
CUX1-211ENST00000546411 CCDC85CA6NKD9 419 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 FAM155AB1AL88 458 aaPredicted RBP14.88□□□□□ -0.03
CUX1-211ENST00000546411 BLOC1S5-TXNDC5H3BN57 136 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 FZD6O60353 706 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 ARHGEF15O94989 841 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 ADH1BP00325 375 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 GAB1Q13480 694 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 E2F2Q14209 437 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 CCSAPQ6IQ19 270 aaPredicted RBP14.88□□□□□ -0.03
CUX1-211ENST00000546411 ARMCX6Q7L4S7 300 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 ASPGQ86U10 573 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 OR9A2Q8NGT5 310 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 WACQ9BTA9 647 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 KLHL42Q9P2K6 505 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 ENPP5Q9UJA9 477 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 GPC6Q9Y625 555 aaPredicted RBP14.88□□□□□ -0.03
CUX1-211ENST00000546411 RHPN2P1A8MT19 583 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 MMP12P39900 470 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 ZNF791Q3KP31 576 aaPredicted RBP14.88□□□□□ -0.03
CUX1-211ENST00000546411 EIPR1Q53HC9 387 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 C6orf132Q5T0Z8 1188 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 UNC5DQ6UXZ4 953 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 SLC9B2Q86UD5 537 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 PDZD3Q86UT5 571 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 NPIPA5A0A0B4J1W7 369 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 ASPDHA6ND91 283 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 NPIPA7E9PJI5 369 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 KHNYNO15037 678 aaKnown RBP14.88□□□□□ -0.03
CUX1-211ENST00000546411 PCDHGA12O60330 932 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 NPIPA8P0DM63 369 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 NPPBP16860 134 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 DDCP20711 480 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 EPHA2P29317 976 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 BMP8BP34820 402 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 LBX1P52954 281 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 YBX1P67809 324 aaKnown RBP14.88□□□□□ -0.03
CUX1-211ENST00000546411 NIPAL1Q6NVV3 410 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 BMP8AQ7Z5Y6 402 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 OR51L1Q8NGJ5 315 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 RACGAP1Q9H0H5 632 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 KCNN2Q9H2S1 579 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 SACM1LQ9NTJ5 587 aa14.88□□□□□ -0.03
CUX1-211ENST00000546411 TEX10Q9NXF1 929 aaPredicted RBP14.88□□□□□ -0.03
CUX1-211ENST00000546411 H0YIV9 168 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 AP1G1O43747 822 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 ALDH3B2P48448 385 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 METAP1P53582 386 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 APOFQ13790 326 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 ASTLQ6HA08 431 aaPredicted RBP14.87□□□□□ -0.03
CUX1-211ENST00000546411 FRMPD2BQ6IN97 320 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 PNCKQ6P2M8 343 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 NRROSQ86YC3 692 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 TMEFF1Q8IYR6 380 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 PLA2G15Q8NCC3 412 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 OR2L2Q8NH16 312 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 PRR14Q9BWN1 585 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 CLEC4MQ9H2X3 399 aaPredicted RBP14.87□□□□□ -0.03
CUX1-211ENST00000546411 SFXN1Q9H9B4 322 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 BEX1Q9HBH7 125 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 ACOT13Q9NPJ3 140 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 NECTIN3Q9NQS3 549 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 PHF11Q9UIL8 331 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 MED31Q9Y3C7 131 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 A0A1B0GVT2 93 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 ENTPD6O75354 484 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 SOX30O94993 753 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 RLN1P04808 185 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 GRK6P43250 576 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 NRMQ8IXM6 262 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 ACOT4Q8N9L9 421 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 OR8J2Q8NGG1 315 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 C5orf34Q96MH7 638 aa14.87□□□□□ -0.03
CUX1-211ENST00000546411 CYP8B1Q9UNU6 501 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms