RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 OVOL3O00110 214 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 MYO1CO00159 1063 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 MSTNO14793 375 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ZBTB14O43829 449 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 PSIP1O75475 530 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 SLITRK5O94991 958 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 METTL18O95568 372 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 SERPING1P05155 500 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 SOD3P08294 240 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CCDC166P0CW27 439 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 IGHV4-31P0DP07 118 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 RBP3P10745 1247 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 NAT1P18440 290 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TBXA2RP21731 343 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TCEA1P23193 301 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 IMPA1P29218 277 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 GCKP35557 465 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 SRP14P37108 136 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 MSH2P43246 934 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TTPAP49638 278 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 STARP49675 285 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 NEK2P51955 445 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 HNRNPFP52597 415 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 NAGLUP54802 743 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 EIF3EP60228 445 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 UBE2HP62256 183 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TBPL1P62380 186 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 VLDLRP98155 873 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CUL1Q13616 776 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 RUNX2Q13950 521 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 RBBP5Q15291 538 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TERF2Q15554 542 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ELAVL1Q15717 326 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF791Q3KP31 576 aaPredicted RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ANKRD39Q53RE8 183 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 PIGGQ5H8A4 983 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TOR1AIP1Q5JTV8 583 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 AARS2Q5JTZ9 985 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CTSL3PQ5NE16 218 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 BICRALQ6AI39 1079 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 FAM166AQ6J272 317 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF474Q6S9Z5 364 aaPredicted RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CLEC2AQ6UVW9 174 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 LYPD4Q6UWN0 246 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TMEM64Q6YI46 380 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 PPP1R21Q6ZMI0 780 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CLEC17AQ6ZS10 378 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 LHFPL2Q6ZUX7 228 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CHMP1BQ7LBR1 199 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 VSIG1Q86XK7 387 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 GRAMD2AQ8IUY3 354 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CDKL3Q8IVW4 592 aaPredicted RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 REXO1L1PQ8IX06 675 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 Q8N3U1 123 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TBC1D19Q8N5T2 526 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 RFLNBQ8N5W9 214 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 BANPQ8N9N5 519 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 MORN4Q8NDC4 146 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TMEM52Q8NDY8 209 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 PPHLN1Q8NEY8 458 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 RAB3IL1Q8TBN0 382 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ZPLD1Q8TCW7 415 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 SLC2A12Q8TD20 617 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 UTP15Q8TED0 518 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 PAQR8Q8TEZ7 354 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 SMAP2Q8WU79 429 aaPredicted RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 PTPMT1Q8WUK0 201 aaPredicted RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 NEUROG1Q92886 237 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 DAZLQ92904 295 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 UCN3Q969E3 161 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 FBXW5Q969U6 566 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 UTP4Q969X6 686 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 REPS1Q96D71 796 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 STARD4Q96DR4 205 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 MARK4Q96L34 752 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CCDC140Q96MF4 163 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 PANX2Q96RD6 677 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 GAL3ST4Q96RP7 486 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ANP32EQ9BTT0 268 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ALOXE3Q9BYJ1 711 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 NUP62CLQ9H1M0 184 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 P2RY12Q9H244 342 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 AKTIPQ9H8T0 292 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 LRRC40Q9H9A6 602 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 PROK2Q9HC23 129 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 EML4Q9HC35 981 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ADAP2Q9NPF8 381 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 DNAJC11Q9NVH1 559 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ELOVL5Q9NYP7 299 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CNIH4Q9P003 139 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 COPS7AQ9UBW8 275 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 LCMT1Q9UIC8 334 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 RNF112Q9ULX5 631 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ZKSCAN5Q9Y2L8 839 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 CRYL1Q9Y2S2 319 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 ZNF281Q9Y2X9 895 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 MMACHCQ9Y4U1 282 aa4.32□□□□□ -1.72
LIMS1-214ENST00000542845 BZW2Q9Y6E2 419 aaKnown RBP4.32□□□□□ -1.72
LIMS1-214ENST00000542845 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.31□□□□□ -1.72
LIMS1-214ENST00000542845 URADA6NGE7 173 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms