RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 GOLGA6L6A8MZA4 724 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 CCNT2O60583 730 aaKnown RBP16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 CD1DP15813 335 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 FOXF2Q12947 444 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 RPS6KA2Q15349 733 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 SF3B4Q15427 424 aaKnown RBP eCLIP16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 HIST2H2ACQ16777 129 aaPredicted RBP16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 EIPR1Q53HC9 387 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 HIST2H2AA3Q6FI13 130 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 GPR180Q86V85 440 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 OR7G3Q8NG95 312 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 SPPL2AQ8TCT8 520 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 SMPDL3BQ92485 455 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 LRRC39Q96DD0 335 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 DACH2Q96NX9 599 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 RHOJQ9H4E5 214 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 CALHM2Q9HA72 323 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 SMYD2Q9NRG4 433 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 MS4A12Q9NXJ0 267 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 GALNT8Q9NY28 637 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 PPP2R2CQ9Y2T4 447 aa16.27■□□□□ 0.2
CLSTN3-214ENST00000542663 FBN1P35555 2871 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 OR6C76A6NM76 312 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 FAM171A2A8MVW0 826 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 PLPP1O14494 284 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 TP53I11O14683 189 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 PIAS1O75925 651 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 CCDC166P0CW27 439 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 PCNAP12004 261 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 NAGLUP54802 743 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 FASTKD3Q14CZ7 662 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 MORF4L2Q15014 288 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 WIPI1Q5MNZ9 446 aaPredicted RBP16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 Q5PR19 223 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 DEPDC1Q5TB30 811 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 MED27Q6P2C8 311 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 TAGAPQ8N103 731 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 RIT1Q92963 219 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 CMTM7Q96FZ5 175 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 OSBPL9Q96SU4 736 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 RBM24Q9BX46 236 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 ZNF717Q9BY31 904 aaPredicted RBP16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 TEX10Q9NXF1 929 aaPredicted RBP16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 CD274Q9NZQ7 290 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 MTO1Q9Y2Z2 717 aaKnown RBP16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 CSPG4Q6UVK1 2322 aa16.26■□□□□ 0.19
CLSTN3-214ENST00000542663 GOLGA6L10A0A0M3HER8 536 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 C2orf92A0A1B0GVN3 265 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 A0A1W2PS29 197 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 SH3D21A4FU49 640 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 TP73O15350 636 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 PHGDHO43175 533 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 SNX4O95219 450 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 GPR75O95800 540 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 TMIGD3P0DMS9 266 aaPredicted RBP16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 SSTR4P31391 388 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 CASP3P42574 277 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 RPL21P46778 160 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 PACS2Q86VP3 889 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 ZCCHC7Q8N3Z6 543 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 ZPLD1Q8TCW7 415 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 ZNF592Q92610 1267 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 UCN3Q969E3 161 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 ABTB1Q969K4 478 aaPredicted RBP16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 PELOQ9BRX2 385 aaKnown RBP16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 CD244Q9BZW8 370 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 PHF11Q9UIL8 331 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 NPFFR2Q9Y5X5 522 aa16.25■□□□□ 0.19
CLSTN3-214ENST00000542663 GLOD5A6NK44 160 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 H7C1Q1 480 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 ARHGEF9O43307 516 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 OR10H2O60403 315 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 ERN1O75460 977 aaKnown RBP16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 PCSK6P29122 969 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 PTPN6P29350 595 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 GMPRP36959 345 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 MASP1P48740 699 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 POU4F1Q01851 419 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 PCDH1Q08174 1060 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 TOMM20Q15388 145 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 MRM1Q6IN84 353 aaKnown RBP16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 PLXDC2Q6UX71 529 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 LRRC70Q7Z2Q7 622 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 LUZP2Q86TE4 346 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 LRRC8AQ8IWT6 810 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 LRRC75A-AS1Q8N1F1 130 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 FBXO36Q8NEA4 188 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 FAM83FQ8NEG4 500 aaPredicted RBP16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 SLC44A1Q8WWI5 657 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 UBE2E3Q969T4 207 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 ISL2Q96A47 359 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 ADIPOR1Q96A54 375 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 TP53INP1Q96A56 240 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 RGMAQ96B86 450 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 TMEM41AQ96HV5 264 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 SECISBP2Q96T21 854 aaKnown RBP16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 TUBA1CQ9BQE3 449 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 SNX15Q9NRS6 342 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 ASB4Q9Y574 426 aa16.24■□□□□ 0.19
CLSTN3-214ENST00000542663 CHD3Q12873 2000 aaKnown RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms