RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 MYH7BA7E2Y1 1941 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 MST1RQ04912 1400 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 TCRBV5S4A2TA0A5A2 114 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 FAAHO00519 579 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CDC123O75794 336 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 ADH1CP00326 375 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 FGF7P21781 194 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ITPKBP27987 946 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 RAP1AP62834 184 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 COL9A3Q14050 684 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 ZNF630Q2M218 657 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 ZBTB37Q5TC79 503 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ALKBH2Q6NS38 261 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 FAM58AQ8N1B3 248 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 OR51D1Q8NGF3 324 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 FEVQ99581 238 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 DOHHQ9BU89 302 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 PRO1933Q9H354 126 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 TAS2R16Q9NYV7 291 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 RNF11Q9Y3C5 154 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 PCDHB14Q9Y5E9 798 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 UNC13AQ9UPW8 1703 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ARAP3Q8WWN8 1544 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ACOT7O00154 380 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CDK14O94921 469 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ZNF286BP0CG31 522 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ITGAMP11215 1152 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 GNB3P16520 340 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 JUNBP17275 347 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 RPL17P18621 184 aaKnown RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 IL1R2P27930 398 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 VIPR1P32241 457 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CTHP32929 405 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 HTR3AP46098 478 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 NRLP54845 237 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 BIDP55957 195 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 BAMBIQ13145 260 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 C9orf152Q5JTZ5 239 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 VASNQ6EMK4 673 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 PIGZQ86VD9 579 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 KLHDC8BQ8IXV7 354 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 OR6V1Q8N148 313 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 SLC25A44Q96H78 314 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 RANBP9Q96S59 729 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 C20orf24Q9BUV8 137 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ADAM19Q9H013 955 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 KATNBL1Q9H079 304 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 RDH14Q9HBH5 336 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 SLC22A11Q9NSA0 550 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 USP36Q9P275 1121 aaKnown RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 GALPQ9UBC7 116 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 AJAP1Q9UKB5 411 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 ATP7AQ04656 1500 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 A0A0B4J2A0 478 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 PHYHO14832 338 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 TMEM127O75204 238 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 SCAF4O95104 1147 aaKnown RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 GLUD1P00367 558 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 AKAIN1P0CW23 69 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 SMIM6P0DI80 62 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ZNF25P17030 456 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 RBMS1P29558 406 aaKnown RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 OXTRP30559 389 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CLCNKBP51801 687 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 FCGRTP55899 365 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ZNF678Q5SXM1 525 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 UNQ6126/PRO20091Q6UXV3 157 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ADGRG5Q8IZF4 528 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 UBAC2Q8NBM4 344 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 FLAD1Q8NFF5 587 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 HMGB4Q8WW32 186 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ZBTB8AQ96BR9 441 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CD180Q99467 661 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 IKZF4Q9H2S9 585 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 MOB1AQ9H8S9 216 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 SHPKQ9UHJ6 478 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 PCCBP05166 539 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CTSHP09668 335 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 ARAFP10398 606 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 GCGRP47871 477 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 GZMKP49863 264 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 PNLIPRP1P54315 467 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 PER3P56645 1201 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CAP1Q01518 475 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 OGDHQ02218 1023 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 KCNC4Q03721 635 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CDONQ4KMG0 1287 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 POMZP3Q6PJE2 187 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CD163Q86VB7 1156 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 MS4A15Q8N5U1 240 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 FRMD1Q8N878 549 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 OR5M8Q8NGP6 311 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 KAZALD1Q96I82 304 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 DPEP3Q9H4B8 488 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 MKKSQ9NPJ1 570 aaPredicted RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 FAM120CQ9NX05 1096 aaKnown RBP8.39□□□□□ -1.07
YBX3-208ENST00000540447 FNIP2Q9P278 1114 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 CORINQ9Y5Q5 1042 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 URGCP-MRPS24S4R325 110 aa8.39□□□□□ -1.07
YBX3-208ENST00000540447 VTNP04004 478 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms