RNA–Protein interactions for RNA: ENST00000538136.1

MSH6-209, Transcript of mutS homolog 6, humanhuman

TSL 2 BASIC

Gene MSH6, Length 4,055 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-209ENST00000538136 CMTM5Q96DZ9 223 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 TEFMQ96QE5 360 aaKnown RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 KCTD14Q9BQ13 255 aaPredicted RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 INPP5KQ9BT40 448 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 TRMOQ9BU70 441 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 EPN3Q9H201 632 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 SLAMF8Q9P0V8 285 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 LRFN1Q9P244 771 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 KIF17Q9P2E2 1029 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 POLR1DQ9Y2S0 133 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 LYVE1Q9Y5Y7 322 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 LOC101059948A0A1B0GTJ6 334 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 TRBC2A0A5B9 178 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 HRKO00198 91 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 KCNH1O95259 989 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 HMGN2P05204 90 aaKnown RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 PGRP06401 933 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 ETFAP13804 333 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 NBL1P41271 181 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 CLK3P49761 638 aaKnown RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 CLCN2P51788 898 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 ACVR1Q04771 509 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 TRAF3Q13114 568 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 TOP3AQ13472 1001 aaPredicted RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 NDUFAF6Q330K2 333 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 RPS26P11Q5JNZ5 115 aaPredicted RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 LIPJQ5W064 366 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 LCN10Q6JVE6 187 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 ABHD17CQ6PCB6 329 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 LRRC25Q8N386 305 aaPredicted RBP6.8□□□□□ -1.32
MSH6-209ENST00000538136 SLC5A8Q8N695 610 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 C1orf216Q8TAB5 229 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 CREB3L4Q8TEY5 395 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 AGAP11Q8TF27 550 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 SDCCAG3Q96C92 435 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 PCDHAC1Q9H158 963 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 MYLK2Q9H1R3 596 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 SERHLQ9NQF3 203 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 MIA3Q5JRA6 1907 aa6.8□□□□□ -1.32
MSH6-209ENST00000538136 A0A1W2PR48 441 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 EEF1E1-BLOC1S5C9J1V9 151 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 EEF1E1O43324 174 aaKnown RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 TYROBPO43914 113 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 FOXD2O60548 495 aaPredicted RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 EDF1O60869 148 aaKnown RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 IL33O95760 270 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 SERPINA6P08185 405 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 GKN3PP0CG01 181 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 CCNOP22674 350 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 F8A1P23610 371 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 RPL4P36578 427 aaKnown RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 FLYWCH1Q4VC44 716 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 FCRL6Q6DN72 434 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 SMARCD3Q6STE5 483 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 TRPM8Q7Z2W7 1104 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 TIPARPQ7Z3E1 657 aaKnown RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 ZNF572Q7Z3I7 529 aaPredicted RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 VN1R4Q7Z5H5 301 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 LSMEM2Q8N112 164 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 CATSPER1Q8NEC5 780 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 UTP15Q8TED0 518 aaKnown RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 DUSP19Q8WTR2 217 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 PROX1Q92786 737 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 FATE1Q969F0 183 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 ZNF382Q96SR6 550 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 ORAI3Q9BRQ5 295 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 VN1R1Q9GZP7 353 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 TRIM45Q9H8W5 580 aaPredicted RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 MEAF6Q9HAF1 191 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 RLIMQ9NVW2 624 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 TAS2R9Q9NYW1 312 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 DKKL1Q9UK85 242 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 WDR45Q9Y484 360 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 PCDHGB7Q9Y5F8 929 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 DMDP11532 3685 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 LILRA5A6NI73 299 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 H3BN98 237 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 HLA-DQA2P01906 255 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 HBQ1P09105 142 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 LIFP15018 202 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 PCSK2P16519 638 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 CDK9P50750 372 aaKnown RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 UBE2IP63279 158 aaKnown RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 STK11Q15831 433 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 PLXDC2Q6UX71 529 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 NLRP8Q86W28 1048 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 CNTN4Q8IWV2 1026 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 CPSF7Q8N684 471 aaKnown RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 MS4A6EQ96DS6 147 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 RTKNQ9BST9 563 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 EXD2Q9NVH0 621 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 DLL3Q9NYJ7 618 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 TCFL5Q9UL49 500 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 RIMKLBQ9ULI2 386 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 COPG1Q9Y678 874 aaKnown RBP6.79□□□□□ -1.32
MSH6-209ENST00000538136 C11orf98E9PRG8 122 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 SLCO1B7G3V0H7 640 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 M0QX08 132 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 CLIC1O00299 241 aa6.79□□□□□ -1.32
MSH6-209ENST00000538136 PRAMEF4O60810 478 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms