RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SAT1P21673 171 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 ADRA1DP25100 572 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 FMO4P31512 558 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 AHRP35869 848 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 SKIV2L2P42285 1042 aaKnown RBP8.28□□□□□ -1.08
USP28-205ENST00000537706 LIMS1P48059 325 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 VSNL1P62760 191 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 BTN3A2P78410 334 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 NTRK2Q16620 822 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 ACSBG2Q5FVE4 666 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 CASC4Q6P4E1 433 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 ZNF534Q76KX8 674 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 FAM47BQ8NA70 645 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 PTPMT1Q8WUK0 201 aaPredicted RBP8.28□□□□□ -1.08
USP28-205ENST00000537706 PEX13Q92968 403 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 MSI2Q96DH6 328 aaKnown RBP8.28□□□□□ -1.08
USP28-205ENST00000537706 BHLHE41Q9C0J9 482 aaPredicted RBP8.28□□□□□ -1.08
USP28-205ENST00000537706 C10orf88Q9H8K7 445 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 B3GALT5Q9Y2C3 310 aa8.28□□□□□ -1.08
USP28-205ENST00000537706 GNB5O14775 395 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 HCRTR2O43614 444 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 ESR1P03372 595 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 MPC1LP0DKB6 136 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 PAFAH1B1P43034 410 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 EEFSECP57772 596 aaKnown RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 C2orf54Q08AI8 447 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 GGTLC2Q14390 218 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 KCNJ11Q14654 390 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 AWAT1Q58HT5 328 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 TOR1AIP1Q5JTV8 583 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 PPP1R21Q6ZMI0 780 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 IFNEQ86WN2 208 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 TRIM42Q8IWZ5 723 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 SYCE1Q8N0S2 351 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 ZNF321PQ8N8H1 164 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 SEMA6DQ8NFY4 1073 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 SPPL2AQ8TCT8 520 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 C10orf105Q8TEF2 133 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 CALR3Q96L12 384 aaKnown RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 GAL3ST4Q96RP7 486 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 ACTR6Q9GZN1 396 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 PIH1D1Q9NWS0 290 aaKnown RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 SLC2A6Q9UGQ3 507 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 AMFRQ9UKV5 643 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 GPR52Q9Y2T5 361 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 SCN3AQ9NY46 2000 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 hCG_1818297A0A087WSY0 165 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 PSTPIP1O43586 416 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 ENO3P13929 434 aaPredicted RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 KRT15P19012 456 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 HPDP32754 393 aaPredicted RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 KIR2DL2P43627 348 aaPredicted RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 EIF3EP60228 445 aaKnown RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 ACVR1Q04771 509 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 FUT7Q11130 342 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 GPS1Q13098 491 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 SETDB1Q15047 1291 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 RPS6KA2Q15349 733 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 BEND6Q5SZJ8 279 aaPredicted RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 NCMAPQ5T1S8 102 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 TIGD3Q6B0B8 471 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 UBE2R2Q712K3 238 aaPredicted RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 DTX2Q86UW9 622 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 PALM2Q8IXS6 379 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 KLHDC8BQ8IXV7 354 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 RCOR2Q8IZ40 523 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 SPATA4Q8NEY3 305 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 RAB3IL1Q8TBN0 382 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 ZNF721Q8TF20 911 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 PIMREGQ9BSJ6 248 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 FUT8Q9BYC5 575 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 ACTR8Q9H981 624 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 TMEFF2Q9UIK5 374 aaPredicted RBP8.27□□□□□ -1.09
USP28-205ENST00000537706 PCDHGB1Q9Y5G3 927 aa8.27□□□□□ -1.09
USP28-205ENST00000537706 IQANK1A0A1B0GTG1 560 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 NIPSNAP2O75323 286 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 SASH3O75995 380 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 TGM6O95932 706 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 CGAP01215 116 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 SERPINA6P08185 405 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 SMIM10L1P0DMW3 83 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 BMP4P12644 408 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 CXCR5P32302 372 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 SCTRP47872 440 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 HADHBP55084 474 aaKnown RBP8.26□□□□□ -1.09
USP28-205ENST00000537706 CBX1P83916 185 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 NAE1Q13564 534 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 TCEAL1Q15170 157 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 PGGHGQ32M88 737 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 CTSL3PQ5NE16 218 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 MRNIPQ6NTE8 343 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 C22orf34Q6ZV56 151 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 BBS12Q6ZW61 710 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 ZNF525Q8N782 197 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 STEAP2Q8NFT2 490 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 ABHD11Q8NFV4 315 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 LILRB1Q8NHL6 650 aaPredicted RBP8.26□□□□□ -1.09
USP28-205ENST00000537706 ASB11Q8WXH4 323 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 GAL3ST3Q96A11 431 aa8.26□□□□□ -1.09
USP28-205ENST00000537706 FAM136AQ96C01 138 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms