RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 TLE4Q04727 773 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 PLA2G7Q13093 441 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 ITGB3BPQ13352 177 aaPredicted RBP3.44□□□□□ -1.86
CD44-235ENST00000532339 NFE2L1Q14494 772 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 ZNF630Q2M218 657 aaPredicted RBP3.44□□□□□ -1.86
CD44-235ENST00000532339 NOTUMQ6P988 496 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 PLEKHM3Q6ZWE6 761 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 ZFAND4Q86XD8 727 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 CCDC170Q8IYT3 715 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 NUP93Q8N1F7 819 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 SIX6OS1Q8N1H7 587 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 GBGT1Q8N5D6 347 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 OR4C6Q8NH72 309 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 FIBINQ8TAL6 211 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 PTP4A1Q93096 173 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 PHF21AQ96BD5 680 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 MTERF3Q96E29 417 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 FEVQ99581 238 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 LMF2Q9BU23 707 aaKnown RBP3.44□□□□□ -1.86
CD44-235ENST00000532339 KATNB1Q9BVA0 655 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 NAPBQ9H115 298 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 LRMDAQ9H2I8 198 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 LINC00597Q9H2U6 94 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 NXF3Q9H4D5 531 aaKnown RBP3.44□□□□□ -1.86
CD44-235ENST00000532339 Q9N2K0 584 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 NRBP2Q9NSY0 501 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 PADI2Q9Y2J8 665 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 KCNK7Q9Y2U2 307 aa3.44□□□□□ -1.86
CD44-235ENST00000532339 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.44□□□□□ -1.86
CD44-235ENST00000532339 ZNF106Q9H2Y7 1883 aaKnown RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 IGKV6-21A0A0C4DH24 114 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 IGKV3D-20A0A0C4DH25 116 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 TEX13DA0A0J9YY54 714 aaPredicted RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 ANKRD66B4E2M5 251 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 FAM86B1E9PN63 330 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 TMX2-CTNND1H3BSU7 103 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 I3L4J1 428 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 EIF3DO15371 548 aaKnown RBP eCLIP3.43□□□□□ -1.86
CD44-235ENST00000532339 GPAA1O43292 621 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 BUD23O43709 281 aaKnown RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 FMO6PO60774 539 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 ERLIN2O94905 339 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 ACSL3O95573 720 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 FAM86B2P0C5J1 330 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 LIFP15018 202 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 TCF4P15884 667 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 EEF1B2P24534 225 aaKnown RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 HTR1EP28566 365 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 CHRNB4P30926 498 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 BRCC3P46736 316 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 ASCL1P50553 236 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 MMP15P51511 669 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 PDX1P52945 283 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 KDSRQ06136 332 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 NCBP1Q09161 790 aaKnown RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 CDC20Q12834 499 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 PRKAA1Q13131 559 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 ZNF674Q2M3X9 581 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 DEFB109BQ30KR1 87 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 NADK2Q4G0N4 442 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 PRR30Q53SZ7 412 aaPredicted RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 NHSL2Q5HYW2 709 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 WDR38Q5JTN6 314 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 ZC2HC1BQ5TFG8 222 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 FAM91A1Q658Y4 838 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 CENPPQ6IPU0 288 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 CD300LGQ6UXG3 332 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 MSANTD1Q6ZTZ1 278 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 C11orf57Q6ZUT1 292 aaPredicted RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 FAM219AQ8IW50 185 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 SLC25A45Q8N413 288 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 OR5M8Q8NGP6 311 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 MRPS31Q92665 395 aaKnown RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 PRCCQ92733 491 aaPredicted RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 SEMA4DQ92854 862 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 DAZLQ92904 295 aaKnown RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 MOB3AQ96BX8 217 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 SLC45A3Q96JT2 553 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 SFXN2Q96NB2 322 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 BTBD10Q9BSF8 475 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 DNAI2Q9GZS0 605 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 TMEM206Q9H813 350 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 COQ3Q9NZJ6 369 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 LIPT1Q9Y234 373 aa3.43□□□□□ -1.86
CD44-235ENST00000532339 SPIN1Q9Y657 262 aaPredicted RBP3.43□□□□□ -1.86
CD44-235ENST00000532339 MYO18AQ92614 2054 aaKnown RBP3.42□□□□□ -1.86
CD44-235ENST00000532339 ELOVL7A1L3X0 281 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 HYKKA2RU49 373 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 STX6O43752 255 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 SHOX2O60902 331 aaPredicted RBP3.42□□□□□ -1.86
CD44-235ENST00000532339 CTSVO60911 334 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 GOSR1O95249 250 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 BMP10O95393 424 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 WDPCPO95876 746 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 KRT19P08727 400 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 ALPPL2P10696 532 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 ATP6V1B1P15313 513 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 PTPN3P26045 913 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 LHX1P48742 406 aa3.42□□□□□ -1.86
CD44-235ENST00000532339 SLC9A3P48764 834 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms