RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 HMX2A2RU54 273 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 LRRC14BA6NHZ5 514 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 GLOD5A6NK44 160 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 HSPB2A8KAH6 182 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 FOXE1O00358 373 aaPredicted RBP10.42□□□□□ -0.74
VPS28-214ENST00000531032 AIFM1O95831 613 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 C2P06681 752 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 SLC35E2P0CK97 266 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 GFAPP14136 432 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 PEX19P40855 299 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 GTF2H2Q13888 395 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 ACAP2Q15057 778 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 RPS6KA2Q15349 733 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 HSPB2Q16082 182 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 CPSF6Q16630 551 aaKnown RBP eCLIP10.42□□□□□ -0.74
VPS28-214ENST00000531032 OR52E8Q6IFG1 317 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 GTF2H2CQ6P1K8 395 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 CYP20A1Q6UW02 462 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 GOLGA7Q7Z5G4 137 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 WDR53Q7Z5U6 358 aaPredicted RBP10.42□□□□□ -0.74
VPS28-214ENST00000531032 NUDT13Q86X67 352 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 TAGAPQ8N103 731 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 RELL2Q8NC24 303 aaPredicted RBP10.42□□□□□ -0.74
VPS28-214ENST00000531032 NINJ1Q92982 152 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 TP53INP1Q96A56 240 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 ZNF597Q96LX8 424 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 GPR78Q96P69 363 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 CXXC4Q9H2H0 198 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 WDR41Q9HAD4 459 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 CXorf21Q9HAI6 301 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 SNX15Q9NRS6 342 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 DNAJB12Q9NXW2 375 aaKnown RBP10.42□□□□□ -0.74
VPS28-214ENST00000531032 TNPO3Q9Y5L0 923 aaKnown RBP10.42□□□□□ -0.74
VPS28-214ENST00000531032 IKBKGQ9Y6K9 419 aa10.42□□□□□ -0.74
VPS28-214ENST00000531032 EXPH5Q8NEV8 1989 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 C2orf92A0A1B0GVN3 265 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 ESYT3A0FGR9 886 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 FAM221AA4D161 298 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 AHRRA9YTQ3 701 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 SYT5O00445 386 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 TP53I11O14683 189 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 SEMA3DO95025 777 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 KLHL2O95198 593 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 LRATO95237 230 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 FREM3P0C091 2139 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 GDF1P27539 372 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 SSTR4P31391 388 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 CEACAM8P31997 349 aaPredicted RBP10.41□□□□□ -0.74
VPS28-214ENST00000531032 PIK3CGP48736 1102 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 TRPC1P48995 793 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 IST1P53990 364 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 SLC7A5Q01650 507 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 CRYZQ08257 329 aaKnown RBP10.41□□□□□ -0.74
VPS28-214ENST00000531032 FUT7Q11130 342 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 DUSP8Q13202 625 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 TRADDQ15628 312 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 FBXL19-AS1Q494R0 122 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 ACSF3Q4G176 576 aaPredicted RBP10.41□□□□□ -0.74
VPS28-214ENST00000531032 MROH9Q5TGP6 573 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 TMEM198Q66K66 360 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 ZNF572Q7Z3I7 529 aaPredicted RBP10.41□□□□□ -0.74
VPS28-214ENST00000531032 GALNT12Q8IXK2 581 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 ZZZ3Q8IYH5 903 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 LIX1Q8N485 282 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 NAXEQ8NCW5 288 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 MNS1Q8NEH6 495 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 SPPL2AQ8TCT8 520 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 DIO2Q92813 273 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 UCN3Q969E3 161 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 JSRP1Q96MG2 331 aaPredicted RBP10.41□□□□□ -0.74
VPS28-214ENST00000531032 SECISBP2Q96T21 854 aaKnown RBP10.41□□□□□ -0.74
VPS28-214ENST00000531032 FOXC2Q99958 501 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 SH3GL2Q99962 352 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 UBQLN3Q9H347 655 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 IPPKQ9H8X2 491 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 ZNF358Q9NW07 568 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 MTRF1LQ9UGC7 380 aaKnown RBP10.41□□□□□ -0.74
VPS28-214ENST00000531032 RNF11Q9Y3C5 154 aa10.41□□□□□ -0.74
VPS28-214ENST00000531032 HRNRQ86YZ3 2850 aaPredicted RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 A0A096LPK6 155 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 C15orf38-AP3S2A0A0A6YYH1 394 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 A0A1W2PS29 197 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 CAPN14A8MX76 684 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 OR7A17O14581 309 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 PGRMC2O15173 223 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 KRT38O76015 456 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 SNX4O95219 450 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 SIX3O95343 332 aaPredicted RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 CLDN9O95484 217 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 EPPINO95925 133 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 GBAP04062 536 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 ALDOAP04075 364 aaKnown RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 HPNP05981 417 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 PHBP35232 272 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 TIMP3P35625 211 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 KIR2DL3P43628 341 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 TMED10P49755 219 aaKnown RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 ASCL1P50553 236 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 NEK2P51955 445 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 FBXW4P57775 412 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms