RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ERGP11308 486 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 CSF2RAP15509 400 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 TNNI3P19429 210 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 ITGB8P26012 769 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 RORCP51449 518 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 ZNF79Q15937 498 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 TRIM69Q86WT6 500 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 DCUN1D3Q8IWE4 304 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 PHC2Q8IXK0 858 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 NATD1Q8N6N6 113 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 OR6F1Q8NGZ6 308 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 UCN3Q969E3 161 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 NXPE3Q969Y0 559 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 TMCO6Q96DC7 493 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 ZNF607Q96SK3 696 aa18.23■□□□□ 0.51
VPS28-213ENST00000530983 CACNB4O00305 520 aaPredicted RBP18.22■□□□□ 0.51
VPS28-213ENST00000530983 SLC28A2O43868 658 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 PRKYO43930 277 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 LZTS3O60299 673 aaPredicted RBP18.22■□□□□ 0.51
VPS28-213ENST00000530983 EFCAB14O75071 495 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 CYP17A1P05093 508 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 DDX5P17844 614 aaKnown RBP18.22■□□□□ 0.51
VPS28-213ENST00000530983 PSMB5P28074 263 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 OR2B6P58173 313 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 PSPHP78330 225 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 LIPKQ5VXJ0 399 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 NXNL2Q5VZ03 156 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 TFGQ92734 400 aaPredicted RBP18.22■□□□□ 0.51
VPS28-213ENST00000530983 LRRC3BQ96PB8 259 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 AIF1LQ9BQI0 150 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 PELI2Q9HAT8 420 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 TVP23BQ9NYZ1 205 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 HEATR5BQ9P2D3 2071 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 COL4A3Q01955 1670 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 M0R3H8 397 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 UGT2B17O75795 530 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 CCL5P13501 91 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 HTR3AP46098 478 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 CCT3P49368 545 aaKnown RBP18.22■□□□□ 0.51
VPS28-213ENST00000530983 MLLT11Q13015 90 aaPredicted RBP18.22■□□□□ 0.51
VPS28-213ENST00000530983 ATAD3CQ5T2N8 411 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 PODNL1Q6PEZ8 512 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 IL17RCQ8NAC3 791 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 OR5D16Q8NGK9 328 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 SETD6Q8TBK2 473 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 RASSF5Q8WWW0 418 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 ZBED6CLQ96FA7 236 aaPredicted RBP18.22■□□□□ 0.51
VPS28-213ENST00000530983 NEDD4LQ96PU5 975 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 WASH6PQ9NQA3 447 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 SLC23A2Q9UGH3 650 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 ZNF221Q9UK13 617 aa18.22■□□□□ 0.51
VPS28-213ENST00000530983 TLX2O43763 284 aaPredicted RBP18.21■□□□□ 0.51
VPS28-213ENST00000530983 VEGFDO43915 354 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 NME6O75414 186 aaPredicted RBP18.21■□□□□ 0.51
VPS28-213ENST00000530983 OR12D1P0DN82 309 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 ADRB3P13945 408 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 BAK1Q16611 211 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 C9orf64Q5T6V5 341 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 TMPRSS11AQ6ZMR5 421 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 UBQLNLQ8IYU4 475 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 FAM26EQ8N5C1 309 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 TBC1D19Q8N5T2 526 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 PLA2G15Q8NCC3 412 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 WDFY2Q96P53 400 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 NPAP1Q9NZP6 1156 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 MYO7AQ13402 2215 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 A0A1W2PRQ8 180 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 SLC35F4A4IF30 521 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 PRRT4C9JH25 899 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 H7BY64 318 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 MYL12BO14950 172 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 ADH5P11766 374 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 MMP11P24347 488 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 GSTM5P46439 218 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 RFX2P48378 723 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 SMIM11AP58511 58 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 LSM11P83369 360 aaKnown RBP eCLIP18.21■□□□□ 0.51
VPS28-213ENST00000530983 ALDH6A1Q02252 535 aaKnown RBP18.21■□□□□ 0.51
VPS28-213ENST00000530983 GPR50Q13585 617 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 SYT14P1Q58G82 188 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 PLPP4Q5VZY2 271 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 OLIG3Q7RTU3 272 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 AMER3Q8N944 861 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 ING5Q8WYH8 240 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 PRAP1Q96NZ9 151 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 POLDIP3Q9BY77 421 aaKnown RBP18.21■□□□□ 0.51
VPS28-213ENST00000530983 OR51I1Q9H343 314 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 MAN2C1Q9NTJ4 1040 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 P2RX2Q9UBL9 471 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 HCN2Q9UL51 889 aa18.21■□□□□ 0.51
VPS28-213ENST00000530983 CENPBD1B2RD01 187 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 SCO2O43819 266 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 ACRP10323 421 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 RACK1P63244 317 aaKnown RBP18.2■□□□□ 0.5
VPS28-213ENST00000530983 C1DQ13901 141 aaKnown RBP18.2■□□□□ 0.5
VPS28-213ENST00000530983 FLYWCH1Q4VC44 716 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 UBE3DQ7Z6J8 389 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 ZER1Q7Z7L7 766 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 NUDT13Q86X67 352 aa18.2■□□□□ 0.5
VPS28-213ENST00000530983 OR52I1Q8NGK6 324 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms