RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, human

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCBP-208	ENST00000520228	CDH17	Q12864	832 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	MSLN	Q13421	630 aa	Predicted RBP	6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	ITGA9	Q13797	1035 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	FGFBP1	Q14512	234 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	POU6F1	Q14863	301 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	LDLRAP1	Q5SW96	308 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	PPP1R21	Q6ZMI0	780 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	CCNI2	Q6ZMN8	369 aa	Predicted RBP	6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	MARCH9	Q86YJ5	346 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	OR6C4	Q8NGE1	309 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	OR52K1	Q8NGK4	314 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	MAPK15	Q8TD08	544 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	ACTRT1	Q8TDG2	376 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	ERGIC1	Q969X5	290 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	TTC25	Q96NG3	672 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	VPS35	Q96QK1	796 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	SF3B5	Q9BWJ5	86 aa	Known RBP	6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	SMARCAL1	Q9NZC9	954 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	OR6C3	Q9NZP0	311 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	APPL1	Q9UKG1	709 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	MKLN1	Q9UL63	735 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	PSAT1	Q9Y617	370 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	CABIN1	Q9Y6J0	2220 aa		6.59	□□□□□ -1.35
SDCBP-208	ENST00000520228	ACACB	O00763	2458 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	PI4KA	P42356	2102 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	CTAGE9	A4FU28	777 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	TTC36	A6NLP5	189 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	GAPDHS	O14556	408 aa	Predicted RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	TIMM23	O14925	209 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	CHUK	O15111	745 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	KMO	O15229	486 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	NUDT21	O43809	227 aa	Known RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	SRP72	O76094	671 aa	Known RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	NDUFB4	O95168	129 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	MSH3	P20585	1137 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	LMO1	P25800	156 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	COIL	P38432	576 aa	Predicted RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	GRIA1	P42261	906 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	CLDN6	P56747	220 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	RPS3A	P61247	264 aa	Known RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	OLR1	P78380	273 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	BASP1	P80723	227 aa	Known RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	XIAP	P98170	497 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	FOXD4	Q12950	439 aa	Predicted RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	NFATC2	Q13469	925 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	TRIP13	Q15645	432 aa	Predicted RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	C14orf28	Q4W4Y0	310 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	GPRC6A	Q5T6X5	926 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	HES3	Q5TGS1	186 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	TTC27	Q6P3X3	843 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	LINGO2	Q7L985	606 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	CPLX4	Q7Z7G2	160 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	TRAPPC5	Q8IUR0	188 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	RASGEF1A	Q8N9B8	481 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228		Q8N9G6	341 aa	Predicted RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	DDHD1	Q8NEL9	900 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	OR13C4	Q8NGS5	318 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	INTS12	Q96CB8	462 aa	Known RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	DNAJC1	Q96KC8	554 aa	Known RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	NAPG	Q99747	312 aa	Predicted RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	C19orf43	Q9BQ61	176 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	CCDC3	Q9BQI4	270 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	ASB8	Q9H765	288 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	EIF2B3	Q9NR50	452 aa	Known RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	SLC6A13	Q9NSD5	602 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	NLE1	Q9NVX2	485 aa	Predicted RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	SMOX	Q9NWM0	555 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	CISD1	Q9NZ45	108 aa	Known RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	ABI3	Q9P2A4	366 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	TBC1D29	Q9UFV1	150 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	SLC23A2	Q9UGH3	650 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	HAO1	Q9UJM8	370 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	KCNK6	Q9Y257	313 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	PCYT1B	Q9Y5K3	369 aa	Predicted RBP	6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	RNF215	Q9Y6U7	377 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	PLXNA2	O75051	1894 aa		6.58	□□□□□ -1.36
SDCBP-208	ENST00000520228	RALGAPA1	Q6GYQ0	2036 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	TRPM6	Q9BX84	2022 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	HEATR9	A2RTY3	570 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	PGPEP1L	A6NFU8	196 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	AP3B1	O00203	1094 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	CCL22	O00626	93 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	ZW10	O43264	779 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	POP7	O75817	140 aa	Known RBP	6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	KRT14	P02533	472 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	RALB	P11234	206 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	ZNF7	P17097	686 aa	Predicted RBP	6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	VCL	P18206	1134 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	FNTA	P49354	379 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	FOXG1	P55316	489 aa	Predicted RBP	6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	MAZ	P56270	477 aa	Known RBP	6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	CCL7	P80098	99 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	SARNP	P82979	210 aa	Known RBP	6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	CDK16	Q00536	496 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	ITGAD	Q13349	1161 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	KCTD19	Q17RG1	926 aa	Predicted RBP	6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	GPR33	Q49SQ1	333 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	ZRANB3	Q5FWF4	1079 aa		6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	C8orf82	Q6P1X6	216 aa	Predicted RBP	6.57	□□□□□ -1.36
SDCBP-208	ENST00000520228	IYD	Q6PHW0	289 aa		6.57	□□□□□ -1.36

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