RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 C1orf21Q9H246 121 aa3.31□□□□□ -1.88
HMGB1P28-201ENST00000507778 HSD3B7Q9H2F3 369 aa3.31□□□□□ -1.88
HMGB1P28-201ENST00000507778 HEXA-AS1Q9H8Q6 139 aa3.31□□□□□ -1.88
HMGB1P28-201ENST00000507778 JPT2Q9H910 190 aa3.31□□□□□ -1.88
HMGB1P28-201ENST00000507778 EIF3KQ9UBQ5 218 aaKnown RBP3.31□□□□□ -1.88
HMGB1P28-201ENST00000507778 PIN4Q9Y237 131 aaKnown RBP3.31□□□□□ -1.88
HMGB1P28-201ENST00000507778 RAD54L2Q9Y4B4 1467 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 SNED1Q8TER0 1413 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 UBE4BO95155 1302 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 AFF2P51816 1311 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 TMEM89A2RUT3 159 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 KRTAP16-1A8MUX0 517 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 HPRP00739 348 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 PDGFBP01127 241 aaPredicted RBP3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 PROS1P07225 676 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 OR9G9P0C7N8 305 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 LMO2P25791 158 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 SLC1A4P43007 532 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 NPY2RP49146 381 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 FCHO2Q0JRZ9 810 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 NME3Q13232 169 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 ITPK1Q13572 414 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 AGAP7PQ5VUJ5 663 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 RHBDD2Q6NTF9 364 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 ADGRD2Q7Z7M1 963 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 CCDC71Q8IV32 467 aaPredicted RBP3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 C4orf32Q8N8J7 132 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 MAPK1IP1LQ8NDC0 245 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 TMEM37Q8WXS4 190 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 PHYHIPQ92561 330 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 TMEM45BQ96B21 275 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 DEFB118Q96PH6 123 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 HSD17B14Q9BPX1 270 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 LRRCC1Q9C099 1032 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 LIME1Q9H400 295 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 Q9HAA7 133 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 LHX3Q9UBR4 397 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 TUBGCP4Q9UGJ1 667 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 SPATA2Q9UM82 520 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 SLC6A5Q9Y345 797 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 FBXO7Q9Y3I1 522 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 ATG4BQ9Y4P1 393 aa3.3□□□□□ -1.88
HMGB1P28-201ENST00000507778 PTPRUQ92729 1446 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 ZMYM6O95789 1325 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 FAM205AQ6ZU69 1335 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 RNF212BA8MTL3 300 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 RASGRF2O14827 1237 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 TXNL1O43396 289 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 STAM2O75886 525 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 FOSL2P15408 326 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 CCNA2P20248 432 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 CALML3P27482 149 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 TMOD1P28289 359 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 AKT2P31751 481 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 HSPA1LP34931 641 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 SPRP35270 261 aaPredicted RBP3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 ETV5P41161 510 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 MATKP42679 507 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 RABIFP47224 123 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 SLC6A8P48029 635 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 PRELPP51888 382 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 GSTO1P78417 241 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 ACY1Q03154 408 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 ENPP2Q13822 863 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 HKDC1Q2TB90 917 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 SNAI3Q3KNW1 292 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 AGKQ53H12 422 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 UNC50Q53HI1 259 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 TCHHL1Q5QJ38 904 aaPredicted RBP3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 IL23RQ5VWK5 629 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 ZNF772Q68DY9 489 aaPredicted RBP3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 RBM43Q6ZSC3 357 aaKnown RBP3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 GPRIN3Q6ZVF9 776 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 MLKLQ8NB16 471 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 CNNM3Q8NE01 707 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 TAF15Q92804 592 aaKnown RBP eCLIP3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 ACCSQ96QU6 501 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 CCDC28BQ9BUN5 200 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 NLNQ9BYT8 704 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 KRT23Q9C075 422 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 FAM124BQ9H5Z6 455 aaPredicted RBP3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 ELL3Q9HB65 397 aaPredicted RBP3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 CNOT2Q9NZN8 540 aaKnown RBP3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 CLIP2Q9UDT6 1046 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 PLA2G4CQ9UP65 541 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 PLEKHA6Q9Y2H5 1048 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 KLHDC2Q9Y2U9 406 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 ZNF175Q9Y473 711 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 CPQQ9Y646 472 aa3.29□□□□□ -1.88
HMGB1P28-201ENST00000507778 TEX48A0A1B0GUV7 120 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 RPL37AP8A6NKH3 93 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 CFLARO15519 480 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 TGFAP01135 160 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 GSTA1P08263 222 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 CCDC159P0C7I6 412 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 RALAP11233 206 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 ARF4P18085 180 aaPredicted RBP3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 PRDX6P30041 224 aa3.28□□□□□ -1.88
HMGB1P28-201ENST00000507778 ASMTP46597 345 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms