RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 MAP4K2Q12851 820 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 KCNAB2Q13303 367 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 PRSS53Q2L4Q9 553 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 PRICKLE4Q2TBC4 344 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 LSM12Q3MHD2 195 aaKnown RBP11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 NXNQ6DKJ4 435 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 ACAD11Q709F0 780 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 LRRC25Q8N386 305 aaPredicted RBP11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 AMER2Q8N7J2 671 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 OR1N1Q8NGS0 311 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 SLC2A12Q8TD20 617 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 ZNF675Q8TD23 568 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 ZNF721Q8TF20 911 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 NCLNQ969V3 563 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 PPCDCQ96CD2 204 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 SENP5Q96HI0 755 aaPredicted RBP11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 ZNF317Q96PQ6 595 aaPredicted RBP11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 BBS4Q96RK4 519 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 PRPF18Q99633 342 aaKnown RBP11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 SMAD5Q99717 465 aaKnown RBP11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 CCDC28BQ9BUN5 200 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 BRINP2Q9C0B6 783 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 OR8D2Q9GZM6 311 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 ZNF552Q9H707 407 aaPredicted RBP11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 KCNK13Q9HB14 408 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 TCF7L2Q9NQB0 619 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 AIG1Q9NVV5 245 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 FAM53CQ9NYF3 392 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 SH3BP4Q9P0V3 963 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 PCDHGB7Q9Y5F8 929 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 GPR45Q9Y5Y3 372 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 TLN1Q9Y490 2541 aaKnown RBP11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 FAM208BQ5VWN6 2430 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 FREM3P0C091 2139 aa11.09□□□□□ -0.63
PDLIM5-208ENST00000504489 IGSF10Q6WRI0 2623 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 POLR3GO15318 223 aaPredicted RBP11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 VIMP08670 466 aaKnown RBP11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 FAM87AP0C7U9 286 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 CD46P15529 392 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 NT5EP21589 574 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 FRKP42685 505 aaPredicted RBP11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 PGDP52209 483 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 MGAT2Q10469 447 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 FUT7Q11130 342 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 MPEG1Q2M385 716 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 ZNF385BQ569K4 471 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 CRB2Q5IJ48 1285 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 AGAP7PQ5VUJ5 663 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 TCTN3Q6NUS6 607 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 FAM180BQ6P0A1 224 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 PCSK4Q6UW60 755 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 CAMKMTQ7Z624 323 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 GALNT12Q8IXK2 581 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 CCDC116Q8IYX3 515 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 ARMC10Q8N2F6 343 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 KIF2BQ8N4N8 673 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 KRTCAP2Q8N6L1 136 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 NATD1Q8N6N6 113 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 EXD3Q8N9H8 876 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 LSM14AQ8ND56 463 aaKnown RBP11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 OR8K3Q8NH51 312 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 SUN3Q8TAQ9 357 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 BRIX1Q8TDN6 353 aaKnown RBP11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 CTHRC1Q96CG8 243 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 COQ8BQ96D53 544 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 ABHD17AQ96GS6 310 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 AGAP4Q96P64 663 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 LMF1Q96S06 567 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 UBL7Q96S82 380 aaPredicted RBP11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 EBF4Q9BQW3 602 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 NUDT9Q9BW91 350 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 DPY30Q9C005 99 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 NPHS2Q9NP85 383 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 ACSS1Q9NUB1 689 aaPredicted RBP11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 FGFR1OP2Q9NVK5 253 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 MAT2BQ9NZL9 334 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 COPS7AQ9UBW8 275 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 ZNF639Q9UID6 485 aa11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 ZNF223Q9UK11 482 aaPredicted RBP11.08□□□□□ -0.64
PDLIM5-208ENST00000504489 TRBV11-1A0A0K0K1C0 115 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 HRKO00198 91 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 UBDO15205 165 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 PDPK1O15530 556 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 ZFAND5O76080 213 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 SLITRK5O94991 958 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 ALPPP05187 535 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 IFI6P09912 130 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 CT62P0C5K7 136 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 TROVE2P10155 538 aaKnown RBP eCLIP11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 IDO1P14902 403 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 S1PR1P21453 382 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 NTSP30990 170 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 SOX18P35713 384 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 SOX11P35716 441 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 IRX1P78414 480 aaPredicted RBP11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 ZNF267Q14586 743 aaPredicted RBP11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 GSTA3Q16772 222 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 ZNF628Q5EBL2 1059 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 CPTPQ5TA50 214 aa11.07□□□□□ -0.64
PDLIM5-208ENST00000504489 C6orf163Q5TEZ5 329 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms