RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 HIPK1Q86Z02 1210 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TRAPPC5Q8IUR0 188 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 ZNF547Q8IVP9 402 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 DDIASQ8IXT1 998 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 SYTL1Q8IYJ3 562 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 PELI3Q8N2H9 469 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 KCTD6Q8NC69 237 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 MAPK1IP1LQ8NDC0 245 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 LPCAT1Q8NF37 534 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 HM13Q8TCT9 377 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 WIPF2Q8TF74 440 aaPredicted RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 WDR60Q8WVS4 1066 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 ROBO4Q8WZ75 1007 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 ZNF653Q96CK0 615 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 PANX2Q96RD6 677 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 PIMREGQ9BSJ6 248 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TSSK1BQ9BXA7 367 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 MAK16Q9BXY0 300 aaKnown RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 KRTAP2-2Q9BYT5 123 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 GPR63Q9BZJ6 419 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 SLC7A5P2Q9GIP4 190 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 RBM38Q9H0Z9 239 aaKnown RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 OR2AG1Q9H205 316 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 HIPK2Q9H2X6 1198 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 OSGEPL1Q9H4B0 414 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 ACTR5Q9H9F9 607 aaPredicted RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 NT5MQ9NPB1 228 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 YAE1D1Q9NRH1 226 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 GPATCH2LQ9NWQ4 482 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 ARMCX1Q9P291 453 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 PCSK1NQ9UHG2 260 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 FAM153AQ9UHL3 310 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 SLC24A2Q9UI40 661 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TEKT2Q9UIF3 430 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 KCNK6Q9Y257 313 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 TMEM98Q9Y2Y6 226 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 AAR2Q9Y312 384 aaKnown RBP3.67□□□□□ -1.82
USP54-217ENST00000498213 ZNF711Q9Y462 761 aa3.67□□□□□ -1.82
USP54-217ENST00000498213 IGHV5-51A0A0C4DH38 117 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 GLYATL1P3A0A0U1RQE8 302 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 DYTNA2CJ06 578 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 GSAPA4D1B5 854 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 ERI2A8K979 691 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 ZNF814B7Z6K7 855 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 AP3B1O00203 1094 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 LIN7AO14910 233 aaPredicted RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 POP7O75817 140 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 KLF7O75840 302 aaPredicted RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 TOXO94900 526 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 PROSCO94903 275 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 GOSR1O95249 250 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 ATP1A1P05023 1023 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 MMP2P08253 660 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 FOLR1P15328 257 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 MSH3P20585 1137 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 CDH3P22223 829 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 PSMA3P25788 255 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 AKT1P31749 480 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 HADHBP55084 474 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 GFERP55789 205 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 SLC37A1P57057 533 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 DCAF7P61962 342 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 ZBED6P86452 979 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 TFF3Q07654 80 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 DMTNQ08495 405 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 GPS2Q13227 327 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 MFAP5Q13361 173 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 DPYSL3Q14195 570 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 KRT33BQ14525 404 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 ITIH4Q14624 930 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 TAF1AQ15573 450 aaPredicted RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 PDCD2Q16342 344 aaPredicted RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 CA9Q16790 459 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 CHRFAM7AQ494W8 412 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 KLHL22Q53GT1 634 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 TDRD12Q587J7 1177 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 ODF2Q5BJF6 829 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 DNAJC21Q5F1R6 531 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 UBAP2Q5T6F2 1119 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 ITPRIPL1Q6GPH6 555 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 FAM198BQ6UWH4 519 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 ISLR2Q6UXK2 745 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 C12orf54Q6X4T0 127 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 CERS6Q6ZMG9 384 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 LINC00696Q6ZRV3 163 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 MARK2Q7KZI7 788 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 APTXQ7Z2E3 356 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 PCGF5Q86SE9 256 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 HOOK3Q86VS8 718 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 AMIGO1Q86WK6 493 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 TMTC1Q8IUR5 882 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 TBC1D21Q8IYX1 336 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 RAB42Q8N4Z0 105 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 OR2C3Q8N628 320 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 HORMAD2Q8N7B1 307 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 GPR26Q8NDV2 337 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 MAGEC3Q8TD91 643 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 AGAP11Q8TF27 550 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 PHF10Q8WUB8 498 aaKnown RBP3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms