RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ITM2A	O43736	263 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	B3GALT2	O43825	422 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	NRP2	O60462	931 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	GUCY1B2	O75343	617 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	SEC22B	O75396	215 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	WISP2	O76076	250 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	MED26	O95402	600 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	HP	P00738	406 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	CELA2A	P08217	269 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	VIM	P08670	466 aa	Known RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF888	P0CJ79	500 aa	Predicted RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	KIT	P10721	976 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	DRD2	P14416	443 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	FBL	P22087	321 aa	Known RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	SERPINB3	P29508	390 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	TLX1	P31314	330 aa	Predicted RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	TNFSF10	P50591	281 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	HK2	P52789	917 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	ARFIP1	P53367	373 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	PMP22	Q01453	160 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	EEF1A2	Q05639	463 aa	Known RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	KLC1	Q07866	573 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	CSTF3	Q12996	717 aa	Known RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	CUL3	Q13618	768 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	E2F2	Q14209	437 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	PRTG	Q2VWP7	1150 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	KHDRBS2	Q5VWX1	349 aa	Known RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	CLEC6A	Q6EIG7	209 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	FAAH2	Q6GMR7	532 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	ZDHHC13	Q8IUH4	622 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	WDR75	Q8IWA0	830 aa	Known RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	KBTBD2	Q8IY47	623 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	OR2L5	Q8NG80	312 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	WDR20	Q8TBZ3	569 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	STT3B	Q8TCJ2	826 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	BRIX1	Q8TDN6	353 aa	Known RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	CREB3L4	Q8TEY5	395 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF473	Q8WTR7	871 aa	Known RBP	8.18	□□□□□ -1.1
USP4-213	ENST00000488520	CKAP2	Q8WWK9	683 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	GAL3ST3	Q96A11	431 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	MIEF2	Q96C03	454 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	VPS50	Q96JG6	964 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF285	Q96NJ3	590 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	TRIM8	Q9BZR9	551 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	SLC26A1	Q9H2B4	701 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	OR51B5	Q9H339	312 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	SEC14L3	Q9UDX4	400 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	VTI1B	Q9UEU0	232 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	ZDHHC2	Q9UIJ5	367 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	NAALAD2	Q9Y3Q0	740 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	AKAP6	Q13023	2319 aa		8.18	□□□□□ -1.1
USP4-213	ENST00000488520	NSG1	A0A0A6YYJ2	146 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	TRAV17	A0A0B4J275	112 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	VSTM2B	A6NLU5	285 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	TRPC5OS	A6NMA1	111 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	SGK494	L7N484	410 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	SAP18	O00422	153 aa	Known RBP	8.17	□□□□□ -1.1
USP4-213	ENST00000488520	KLF11	O14901	512 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	PRAMEF4	O60810	478 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	LYPLA1	O75608	230 aa	Predicted RBP	8.17	□□□□□ -1.1
USP4-213	ENST00000488520	RASAL1	O95294	804 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	NSA2	O95478	260 aa	Known RBP	8.17	□□□□□ -1.1
USP4-213	ENST00000488520	CHRNG	P07510	517 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	ZGLP1	P0C6A0	271 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	LINC00032	P0C843	101 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	PRR35	P0CG20	571 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	CD22	P20273	847 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	IL10	P22301	178 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	CA7	P43166	264 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	SSR2	P43308	183 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	ST13	P50502	369 aa	Known RBP	8.17	□□□□□ -1.1
USP4-213	ENST00000488520	MTTP	P55157	894 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	ADORA2A-AS1	P86434	159 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	ACSM2A	Q08AH3	577 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	SLAMF1	Q13291	335 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	ABRAXAS2	Q15018	415 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	CDSN	Q15517	529 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	DEFB134	Q4QY38	66 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	CCNYL2	Q5T2Q4	361 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	MFSD4B	Q5TF39	518 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	PRAMEF9	Q5VWM5	478 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	ACSM2B	Q68CK6	577 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	SCIMP	Q6UWF3	145 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	VN1R4	Q7Z5H5	301 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	C7orf57	Q8NEG2	295 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	OR9A4	Q8NGU2	314 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	UTP15	Q8TED0	518 aa	Known RBP	8.17	□□□□□ -1.1
USP4-213	ENST00000488520	TWIST2	Q8WVJ9	160 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	PSMF1	Q92530	271 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	MS4A6E	Q96DS6	147 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	KCNA7	Q96RP8	456 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	SERINC2	Q96SA4	455 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	NPL	Q9BXD5	320 aa	Predicted RBP	8.17	□□□□□ -1.1
USP4-213	ENST00000488520	MS4A8	Q9BY19	250 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	KLHL31	Q9H511	634 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	WDR41	Q9HAD4	459 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	DMRT3	Q9NQL9	472 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	MS4A12	Q9NXJ0	267 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	TRPC4	Q9UBN4	977 aa		8.17	□□□□□ -1.1
USP4-213	ENST00000488520	ZNF282	Q9UDV7	671 aa	Predicted RBP	8.17	□□□□□ -1.1

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms