RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TMEM64Q6YI46 380 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 RNF111Q6ZNA4 994 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 SRRM1Q8IYB3 904 aaKnown RBP12.99□□□□□ -0.33
UPF3A-204ENST00000475218 C7orf57Q8NEG2 295 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 KIF18AQ8NI77 898 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 TRPC4APQ8TEL6 797 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 PELOQ9BRX2 385 aaKnown RBP12.99□□□□□ -0.33
UPF3A-204ENST00000475218 IL1RL2Q9HB29 575 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 TNFRSF10DQ9UBN6 386 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 ADAM29Q9UKF5 820 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 CNOT11Q9UKZ1 510 aaKnown RBP12.99□□□□□ -0.33
UPF3A-204ENST00000475218 EMCNQ9ULC0 261 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 PHF3Q92576 2039 aaKnown RBP12.99□□□□□ -0.33
UPF3A-204ENST00000475218 A0A1B0GVC2 190 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 KIF2AO00139 706 aaPredicted RBP12.99□□□□□ -0.33
UPF3A-204ENST00000475218 LRATO95237 230 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 OTCP00480 354 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 SNRPB2P08579 225 aaKnown RBP12.99□□□□□ -0.33
UPF3A-204ENST00000475218 RHOXF2BP0C7M4 288 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 ENDOUP21128 410 aaKnown RBP12.99□□□□□ -0.33
UPF3A-204ENST00000475218 PLGLB1Q02325 96 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 CLCQ05315 142 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 FUT7Q11130 342 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 IFT88Q13099 833 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 SLC29A2Q14542 456 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 C10orf62Q5T681 223 aaPredicted RBP12.99□□□□□ -0.33
UPF3A-204ENST00000475218 TTC19Q6DKK2 380 aaPredicted RBP12.99□□□□□ -0.33
UPF3A-204ENST00000475218 GK5Q6ZS86 529 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 FAM47EQ6ZV65 393 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 IFT20Q8IY31 132 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 FAM109AQ8N4B1 249 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 SLC15A4Q8N697 577 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 CEP112Q8N8E3 955 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 SIMC1Q8NDZ2 872 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 ADIPOR1Q96A54 375 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 TM4SF18Q96CE8 201 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 NTNG2Q96CW9 530 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 ART5Q96L15 291 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 GAL3ST4Q96RP7 486 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 RHOXF2Q9BQY4 288 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 ELOVL6Q9H5J4 265 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 PNPLA3Q9NST1 481 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 TRPS1Q9UHF7 1281 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 SLC12A4Q9UP95 1085 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 DTX4Q9Y2E6 619 aa12.99□□□□□ -0.33
UPF3A-204ENST00000475218 NINQ8N4C6 2090 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 IQANK1A0A1B0GTG1 560 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 GOLGA8RI6L899 631 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 TNFRSF8P28908 595 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 HTR6P50406 440 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 CCNYL2Q5T2Q4 361 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 PRAMEF20Q5VT98 475 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 SLC48A1Q6P1K1 146 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 RGS9BPQ6ZS82 235 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 SH2D5Q6ZV89 423 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 TRILQ7L0X0 811 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 SLC22A16Q86VW1 577 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 SLC22A8Q8TCC7 542 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 MTBPQ96DY7 904 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 PKNOX2Q96KN3 472 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 ZNF703Q9H7S9 590 aaPredicted RBP12.98□□□□□ -0.33
UPF3A-204ENST00000475218 WDR41Q9HAD4 459 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 BRF2Q9HAW0 419 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 CHST11Q9NPF2 352 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 PCDHA9Q9Y5H5 950 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 HCFC1P51610 2035 aa12.98□□□□□ -0.33
UPF3A-204ENST00000475218 POLQO75417 2590 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 OR6C76A6NM76 312 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 NPIPA2E9PIF3 369 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 NPIPA3F8WFD2 350 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 MANBAO00462 879 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 P04436 131 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 CPMP14384 443 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 XKP51811 444 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 MAPK12P53778 367 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 RAE1P78406 368 aaKnown RBP12.97□□□□□ -0.33
UPF3A-204ENST00000475218 NTRK2Q16620 822 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 GXYLT1Q4G148 440 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 TEX35Q5T0J7 233 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 SLC22A10Q63ZE4 541 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 RTL6Q6ICC9 239 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 FAM180BQ6P0A1 224 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 SLC29A4Q7RTT9 530 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 FBXW8Q8N3Y1 598 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 C1orf52Q8N6N3 182 aaKnown RBP12.97□□□□□ -0.33
UPF3A-204ENST00000475218 CDYL2Q8N8U2 506 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 OR4K14Q8NGD5 310 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 SELENOMQ8WWX9 145 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 SDCCAG3Q96C92 435 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 ZNF681Q96N22 645 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 ZNF382Q96SR6 550 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 SPRR3Q9UBC9 169 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 FETUBQ9UGM5 382 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 ZNF639Q9UID6 485 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.97□□□□□ -0.33
UPF3A-204ENST00000475218 A0A1W2PPM1 405 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 ACOT7O00154 380 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 DYRK3O43781 588 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 SHBGP04278 402 aa12.97□□□□□ -0.33
UPF3A-204ENST00000475218 PIK3R1P27986 724 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms