RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 NPAS2Q99743 824 aa6.52□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF160Q9HCG1 818 aa6.52□□□□□ -1.37
LIMD1-204ENST00000474665 RIC8BQ9NVN3 520 aa6.52□□□□□ -1.37
LIMD1-204ENST00000474665 PPIEQ9UNP9 301 aaKnown RBP6.52□□□□□ -1.37
LIMD1-204ENST00000474665 POLHQ9Y253 713 aa6.52□□□□□ -1.37
LIMD1-204ENST00000474665 TMED5Q9Y3A6 229 aa6.52□□□□□ -1.37
LIMD1-204ENST00000474665 GPR45Q9Y5Y3 372 aa6.52□□□□□ -1.37
LIMD1-204ENST00000474665 HIVEP3Q5T1R4 2406 aa6.52□□□□□ -1.37
LIMD1-204ENST00000474665 SPG11Q96JI7 2443 aa6.52□□□□□ -1.37
LIMD1-204ENST00000474665 C1orf226A1L170 272 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 TMEM200CA6NKL6 621 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 TRPC5OSA6NMA1 111 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 MYO1GB0I1T2 1018 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 C9JVG2 144 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 PRKNO60260 465 aaPredicted RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 MAN1A2O60476 641 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 TBX19O60806 448 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 SCN2BO60939 215 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 NME6O75414 186 aaPredicted RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 CEACAM4O75871 244 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 MYO1DO94832 1006 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 TGDSO95455 350 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 HPP00738 406 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 PDGFAP04085 211 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 IGKV3-11P04433 115 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 CT62P0C5K7 136 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 SLC35E2P0CK97 266 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ITGAMP11215 1152 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 LAMP1P11279 417 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 EFNA1P20827 205 aaPredicted RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 TLX1P31314 330 aaPredicted RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 FEN1P39748 380 aaKnown RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 STT3AP46977 705 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ALDH9A1P49189 494 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 SEC24CP53992 1094 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 AQP5P55064 265 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 WNT3P56703 355 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 SOX8P57073 446 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 OR4D2P58180 307 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 SLC26A5P58743 744 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 C2orf80Q0P641 193 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 SF3A3Q12874 501 aaKnown RBP eCLIP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ELAVL1Q15717 326 aaKnown RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 LTB4RQ15722 352 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 PLAG1Q6DJT9 500 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 PAPD4Q6PIY7 484 aaKnown RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 FAM111BQ6SJ93 734 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 IKBIPQ70UQ0 350 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 RAB43Q86YS6 212 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 APLFQ8IW19 511 aaPredicted RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 HOMEZQ8IX15 550 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 PARP9Q8IXQ6 854 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ST13P4Q8IZP2 240 aaPredicted RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 KIRREL3Q8IZU9 778 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 KIF2BQ8N4N8 673 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 OR7A2PQ8NGA2 310 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 OR4K14Q8NGD5 310 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 CDC26Q8NHZ8 85 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 C9orf43Q8TAL5 461 aaPredicted RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF721Q8TF20 911 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 METTL21AQ8WXB1 218 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 MARVELD3Q96A59 401 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 CIDECQ96AQ7 238 aaPredicted RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 EXOSC8Q96B26 276 aaKnown RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 CTHRC1Q96CG8 243 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 KLHL29Q96CT2 875 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF764Q96H86 408 aaPredicted RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 MARK4Q96L34 752 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 IP6K3Q96PC2 410 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 REPIN1Q9BWE0 567 aaKnown RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 BRINP2Q9C0B6 783 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ING2Q9H160 280 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ANKRA2Q9H9E1 313 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 CXorf21Q9HAI6 301 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 NPHS2Q9NP85 383 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ADAP2Q9NPF8 381 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 SLC35C2Q9NQQ7 365 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 PNO1Q9NRX1 252 aaKnown RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 AIG1Q9NVV5 245 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 EHD3Q9NZN3 535 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 ATP6V1HQ9UI12 483 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 DCTN4Q9UJW0 460 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 UTS2RQ9UKP6 389 aa6.51□□□□□ -1.37
LIMD1-204ENST00000474665 MRPS33Q9Y291 106 aaKnown RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 WBP11Q9Y2W2 641 aaKnown RBP6.51□□□□□ -1.37
LIMD1-204ENST00000474665 SHANK1Q9Y566 2161 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 SAGE2PA6NJ88 616 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 C17orf105B2RV13 164 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 E9PBE3 544 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 PCDH17O14917 1159 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 SCAMP2O15127 329 aaKnown RBP6.5□□□□□ -1.37
LIMD1-204ENST00000474665 POLR3GO15318 223 aaPredicted RBP6.5□□□□□ -1.37
LIMD1-204ENST00000474665 KLHL41O60662 606 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 ZNF354AO60765 605 aaPredicted RBP6.5□□□□□ -1.37
LIMD1-204ENST00000474665 GUCY1B2O75343 617 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 ERAL1O75616 437 aaKnown RBP6.5□□□□□ -1.37
LIMD1-204ENST00000474665 CBX7O95931 251 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 ATP1B1P05026 303 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 SERPINA7P05543 415 aa6.5□□□□□ -1.37
LIMD1-204ENST00000474665 PRPS2P11908 318 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms