RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 TBC1D3GQ6DHY5 549 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 SIGIRRQ6IA17 410 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3CQ6IPX1 549 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ZSCAN25Q6NSZ9 544 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CCDC144NLQ6NUI1 221 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ACSM6Q6P461 480 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 DET1Q7L5Y6 550 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 LDB1Q86U70 411 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CCDC36Q8IYA8 594 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ZDHHC23Q8IYP9 409 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D3Q8IZP1 549 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 GTPBP8Q8N3Z3 284 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 IQCF1Q8N6M8 205 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 OR5D13Q8NGL4 314 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TRMT10AQ8TBZ6 339 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CLEC4CQ8WTT0 213 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 PABPC5Q96DU9 382 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 METTL2AQ96IZ6 378 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 MUS81Q96NY9 551 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 DUX5Q96PT3 197 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 SLITRK1Q96PX8 696 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 RAB40CQ96S21 281 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CCNL2Q96S94 520 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 KRT12Q99456 494 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 H2AFJQ9BTM1 129 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 MSTO1Q9BUK6 570 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ELOVL1Q9BW60 279 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 KCNN2Q9H2S1 579 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 OR51B6Q9H340 312 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 FN3KQ9H479 309 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 RANBP3Q9H6Z4 567 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 CATSPERBQ9H7T0 1116 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 SP140LQ9H930 580 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 PARVBQ9HBI1 364 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 C12orf4Q9NQ89 552 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC22A11Q9NSA0 550 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 GRHL1Q9NZI5 618 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 HACL1Q9UJ83 578 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 SCML1Q9UN30 329 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC12A4Q9UP95 1085 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 LAMP3Q9UQV4 416 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 POFUT2Q9Y2G5 429 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 PCDHAC2Q9Y5I4 1007 aa4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 ROCK2O75116 1388 aaKnown RBP4.49□□□□□ -1.69
CCDC88A-210ENST00000468534 TRAV26-1A0A087WT03 109 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 PCP4L1A6NKN8 68 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 SNTNA6NMZ2 147 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 NPIPB5A8MRT5 1133 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 M0QZQ0 153 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC28A1O00337 649 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 PTGESO14684 152 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 OGG1O15527 345 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 B4GAT1O43505 415 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ATP8B1O43520 1251 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 RAD51DO75771 328 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 SNAPINO95295 136 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 PAPSS2O95340 614 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 APOEP02649 317 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 FCER2P06734 321 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 HEXAP06865 529 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 FABP1P07148 127 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 CRYGBP07316 175 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ANXA5P08758 320 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 CTXN2P0C2S0 81 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 FGF3P11487 239 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 IL7RP16871 459 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 RAB4AP20338 218 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ACADLP28330 430 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 OR1D2P34982 312 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 PRCPP42785 496 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ARRB1P49407 418 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 GNG10P50151 68 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 IST1P53990 364 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 RGS8P57771 180 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 SEC61GP60059 68 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ACTBP60709 375 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ACTA2P62736 377 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ACTG1P63261 375 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ACTG2P63267 376 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ACTC1P68032 377 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ACTA1P68133 377 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 SIRPAP78324 504 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 SIGLEC14Q08ET2 396 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ILF2Q12905 390 aaKnown RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ME3Q16798 604 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 KLHL38Q2WGJ6 581 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 EDRF1Q3B7T1 1238 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 KRTAP27-1Q3LI81 207 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 UGT3A2Q3SY77 523 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 ZC2HC1CQ53FD0 456 aaPredicted RBP4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 SLC35D2Q76EJ3 337 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 KRT27Q7Z3Y8 459 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 NUDCD3Q8IVD9 361 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 CPXM2Q8N436 756 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 PQLC3Q8N755 202 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 COLGALT1Q8NBJ5 622 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 OR10H4Q8NGA5 316 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 OR5M1Q8NGP8 315 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 OR13C3Q8NGS6 347 aa4.48□□□□□ -1.69
CCDC88A-210ENST00000468534 TBC1D16Q8TBP0 767 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms