RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 GPR19Q15760 415 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 PUS10Q3MIT2 529 aaKnown RBP17.22■□□□□ 0.35
COL9A3-205ENST00000466192 FAHD1Q6P587 224 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 RNF44Q7L0R7 432 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 CLVS1Q8IUQ0 354 aaPredicted RBP17.22■□□□□ 0.35
COL9A3-205ENST00000466192 RBM12BQ8IXT5 1001 aaKnown RBP17.22■□□□□ 0.35
COL9A3-205ENST00000466192 CNIH3Q8TBE1 160 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 GEMIN6Q8WXD5 167 aaKnown RBP17.22■□□□□ 0.35
COL9A3-205ENST00000466192 TMEM19Q96HH6 336 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 ZNF681Q96N22 645 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 ZNF347Q96SE7 839 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 PCED1AQ9H1Q7 454 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 PRDM6Q9NQX0 595 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 TMEM74BQ9NUR3 256 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 ZSCAN32Q9NX65 697 aa17.22■□□□□ 0.35
COL9A3-205ENST00000466192 STK25O00506 426 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 EIF2S1P05198 315 aaKnown RBP17.21■□□□□ 0.35
COL9A3-205ENST00000466192 CSNK2A2P19784 350 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-205ENST00000466192 RYKP34925 604 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 RUNX2Q13950 521 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 RAB39AQ14964 217 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 ELOCQ15369 112 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 CEBPEQ15744 281 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 IQCHQ86VS3 1027 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 ARMC8Q8IUR7 673 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 OR5D16Q8NGK9 328 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 LMX1AQ8TE12 382 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 RERGQ96A58 199 aaPredicted RBP17.21■□□□□ 0.35
COL9A3-205ENST00000466192 SLC35G5Q96KT7 338 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 C10orf90Q96M02 699 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 HSPA12BQ96MM6 686 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 SERINC2Q96SA4 455 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 OR51I1Q9H343 314 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 THSD1Q9NS62 852 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 PCDH15Q96QU1 1955 aa17.21■□□□□ 0.35
COL9A3-205ENST00000466192 PRAMEF27A3QJZ7 478 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 URADA6NGE7 173 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 HCRTR1O43613 425 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 OR12D1P0DN82 309 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 FOXD4Q12950 439 aaPredicted RBP17.21■□□□□ 0.34
COL9A3-205ENST00000466192 BROXQ5VW32 411 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 TMEM64Q6YI46 380 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 CLDN23Q96B33 292 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 ROGDIQ9GZN7 287 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 SEMA3GQ9NS98 782 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 AASSQ9UDR5 926 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 POMT2Q9UKY4 750 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 GMPPBQ9Y5P6 360 aa17.21■□□□□ 0.34
COL9A3-205ENST00000466192 SLC1A7O00341 560 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 SPTBP11277 2137 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 ITGA2P17301 1181 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 PRKAG1P54619 331 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 LIM2P55344 173 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 TNFRSF17Q02223 184 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 PIGFQ07326 219 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 CDK5R2Q13319 367 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-205ENST00000466192 TMEM107Q6UX40 140 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 PRSS41Q7RTY9 318 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 ARL14Q8N4G2 192 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 CAMKK1Q8N5S9 505 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 BPIFB6Q8NFQ5 453 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 C1orf216Q8TAB5 229 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 GIPC3Q8TF64 312 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 FEVQ99581 238 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 RSPO3Q9BXY4 272 aaPredicted RBP17.2■□□□□ 0.34
COL9A3-205ENST00000466192 LIN28AQ9H9Z2 209 aaKnown RBP17.2■□□□□ 0.34
COL9A3-205ENST00000466192 CXorf21Q9HAI6 301 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 CDC14AQ9UNH5 594 aa17.2■□□□□ 0.34
COL9A3-205ENST00000466192 PTGES3LE9PB15 166 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 RECKO95980 971 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 ST6GAL1P15907 406 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 MATN1P21941 496 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 BCKDHBP21953 392 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 CPN2P22792 545 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 MPIP34949 423 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 OLR1P78380 273 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 KEAP1Q14145 624 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 ABHD13Q7L211 337 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 TMEFF1Q8IYR6 380 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 SHISA5Q8N114 240 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 SETD9Q8NE22 299 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 OR9A2Q8NGT5 310 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 SFXN5Q8TD22 340 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 OTUB1Q96FW1 271 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-205ENST00000466192 CSF3RQ99062 836 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 FAM60AQ9NP50 221 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 GIMAP4Q9NUV9 329 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 BLOC1S6Q9UL45 172 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 DAPP1Q9UN19 280 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 ZNF780BQ9Y6R6 833 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 ZNF860A6NHJ4 632 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 B3GALT2O43825 422 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 ABCB7O75027 752 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 ALOX12P18054 663 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 FUT4P22083 530 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 BUD31P41223 144 aaPredicted RBP17.19■□□□□ 0.34
COL9A3-205ENST00000466192 NPRL3Q12980 569 aa17.19■□□□□ 0.34
COL9A3-205ENST00000466192 GANABQ14697 944 aaKnown RBP17.19■□□□□ 0.34
COL9A3-205ENST00000466192 SYPL1Q16563 259 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms