RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 MYBPHQ13203 477 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 ZNF267Q14586 743 aaPredicted RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 CDSNQ15517 529 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 UAP1Q16222 522 aaPredicted RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 NTRK2Q16620 822 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 EMC4Q5J8M3 183 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 C1orf185Q5T7R7 199 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 RIPPLY2Q5TAB7 128 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 C18orf63Q68DL7 685 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 MRM1Q6IN84 353 aaKnown RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 ADNP2Q6IQ32 1131 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 SCIMPQ6UWF3 145 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 LCA5Q86VQ0 697 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 OR4N5Q8IXE1 308 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 SAMD14Q8IZD0 417 aaPredicted RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 CENPLQ8N0S6 344 aaPredicted RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 LRRC25Q8N386 305 aaPredicted RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 MARVELD2Q8N4S9 558 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 OR5M9Q8NGP3 310 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 KCTD4Q8WVF5 259 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 PPWD1Q96BP3 646 aaKnown RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 ZNF597Q96LX8 424 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 GAL3ST4Q96RP7 486 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 DOHHQ9BU89 302 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 CNPPD1Q9BV87 410 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 ERVK-6Q9BXR3 956 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 WWTR1Q9GZV5 400 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 ACSS3Q9H6R3 686 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 BRF2Q9HAW0 419 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 SH2D2AQ9NP31 389 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 TUBA8Q9NY65 449 aaPredicted RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 CPSF2Q9P2I0 782 aaKnown RBP6.52□□□□□ -1.37
VPS41-208ENST00000448833 ITGB1BP2Q9UKP3 347 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 SNX6Q9UNH7 406 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 ERVK-19Q9WJR5 959 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 ASB4Q9Y574 426 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 HRH3Q9Y5N1 445 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 NPFFR2Q9Y5X5 522 aa6.52□□□□□ -1.37
VPS41-208ENST00000448833 A0A0A6YYD5 115 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 MYOCOSA0A1B0GUC4 107 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 A0A1W2PR48 441 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 C1orf226A1L170 272 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 CCDC151A5D8V7 595 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 PINLYPA6NC86 204 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 NKX2-6A6NCS4 301 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 FAM90A27PA6NNH2 459 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 G3V3Y1 287 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 SH3BGRLO75368 114 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 BCAS2O75934 225 aaPredicted RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 OTCP00480 354 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 IL2RAP01589 272 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 GLI4P10075 376 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 CCL3P10147 92 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 PORP16435 677 aaPredicted RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 CSNK2A2P19784 350 aaPredicted RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 GDF1P27539 372 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 BSGP35613 385 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 TIMP3P35625 211 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 PIGAP37287 484 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 DNASE1L1P49184 302 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 HNRNPH2P55795 449 aaKnown RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 DCAF7P61962 342 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 EEF1A1P68104 462 aaKnown RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 MRPS25P82663 173 aaKnown RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 ID2Q02363 134 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 TFF3Q07654 80 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 SNTA1Q13424 505 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 RPS6KA2Q15349 733 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 GLE1Q53GS7 698 aaKnown RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 CCNYL2Q5T2Q4 361 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 EEF1A1P5Q5VTE0 462 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 FRG2Q64ET8 278 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 ARSKQ6UWY0 536 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 SYT10Q6XYQ8 523 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 GOLGA7Q7Z5G4 137 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 MILR1Q7Z6M3 343 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 KIF18BQ86Y91 864 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 CCDC71Q8IV32 467 aaPredicted RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 GALNT12Q8IXK2 581 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 C9orf40Q8IXQ3 194 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 ZNF321PQ8N8H1 164 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 MNS1Q8NEH6 495 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 NEIL3Q8TAT5 605 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 WDR20Q8TBZ3 569 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 DIO2Q92813 273 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 HSPBAP1Q96EW2 488 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 JSRP1Q96MG2 331 aaPredicted RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 FRG2BQ96QU4 278 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 MRPL57Q9BQC6 102 aaKnown RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 FAIM2Q9BWQ8 316 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 SHCBP1LQ9BZQ2 653 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 UCK2Q9BZX2 261 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 OR10A5Q9H207 317 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 VPS11Q9H270 941 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 ELOVL6Q9H5J4 265 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 ZNF703Q9H7S9 590 aaPredicted RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 NOL11Q9H8H0 719 aaKnown RBP6.51□□□□□ -1.37
VPS41-208ENST00000448833 CXorf21Q9HAI6 301 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 ALKBH4Q9NXW9 302 aa6.51□□□□□ -1.37
VPS41-208ENST00000448833 TNFRSF10DQ9UBN6 386 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms