RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ZNF780BQ9Y6R6 833 aa14.07□□□□□ -0.16
LIMS3-201ENST00000437679 A0A1B0GUH1 482 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 RGS16O15492 202 aaPredicted RBP14.06□□□□□ -0.16
LIMS3-201ENST00000437679 IL3P08700 152 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 STSP08842 583 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 ALDH3A1P30838 453 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 SSTR4P31391 388 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 FEN1P39748 380 aaKnown RBP14.06□□□□□ -0.16
LIMS3-201ENST00000437679 SLC37A1P57057 533 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 RAE1P78406 368 aaKnown RBP14.06□□□□□ -0.16
LIMS3-201ENST00000437679 HEPACAMQ14CZ8 416 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.06□□□□□ -0.16
LIMS3-201ENST00000437679 ZNF750Q32MQ0 723 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 HLA-DQA1Q5Y7H0 255 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 GALNT18Q6P9A2 607 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 TRIM46Q7Z4K8 759 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 HOMEZQ8IX15 550 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 SLC15A4Q8N697 577 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 GOLM1Q8NBJ4 401 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 OR7G1Q8NGA0 311 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 C16orf78Q8WTQ4 265 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 EBPLQ9BY08 206 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 WWTR1Q9GZV5 400 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 PFDN4Q9NQP4 134 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 SLC17A7Q9P2U7 560 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 UTS2RQ9UKP6 389 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 MYO7BQ6PIF6 2116 aa14.06□□□□□ -0.16
LIMS3-201ENST00000437679 C2orf92A0A1B0GVN3 265 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 TFECO14948 347 aaPredicted RBP14.05□□□□□ -0.16
LIMS3-201ENST00000437679 AZIN1O14977 448 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 LRRTM2O43300 516 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 CHEK2O96017 543 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 ANXA4P09525 319 aaPredicted RBP14.05□□□□□ -0.16
LIMS3-201ENST00000437679 CT62P0C5K7 136 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 GSTM5P46439 218 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 PER3P56645 1201 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 GPR85P60893 370 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 ZNF844Q08AG5 666 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 FUT7Q11130 342 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 EBPQ15125 230 aaKnown RBP14.05□□□□□ -0.16
LIMS3-201ENST00000437679 DND1Q8IYX4 353 aaKnown RBP14.05□□□□□ -0.16
LIMS3-201ENST00000437679 TAGAPQ8N103 731 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 PSMG3-AS1Q96PY0 264 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 BRINP2Q9C0B6 783 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 OR10A5Q9H207 317 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 EML4Q9HC35 981 aaKnown RBP14.05□□□□□ -0.16
LIMS3-201ENST00000437679 TNFRSF12AQ9NP84 129 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 GIMAP4Q9NUV9 329 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 SIRT5Q9NXA8 310 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 HEY2Q9UBP5 337 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 DOPEY1Q5JWR5 2465 aa14.05□□□□□ -0.16
LIMS3-201ENST00000437679 EML6Q6ZMW3 1958 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 TRGV8A0A0C4DH27 118 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 SLC28A1O00337 649 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 ASNA1O43681 348 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 NPHS1O60500 1241 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 ZNF354AO60765 605 aaPredicted RBP14.04□□□□□ -0.16
LIMS3-201ENST00000437679 RSL1D1O76021 490 aaKnown RBP14.04□□□□□ -0.16
LIMS3-201ENST00000437679 LDLRP01130 860 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 CLPSP04118 112 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 P04436 131 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 ATP1B1P05026 303 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 CASP6P55212 293 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 ZNF763Q0D2J5 394 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 GTF3C1Q12789 2109 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 C1QL3Q5VWW1 255 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 CLEC6AQ6EIG7 209 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 SIAH3Q8IW03 269 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 SAMD14Q8IZD0 417 aaPredicted RBP14.04□□□□□ -0.16
LIMS3-201ENST00000437679 GHDCQ8N2G8 530 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 LRRC25Q8N386 305 aaPredicted RBP14.04□□□□□ -0.16
LIMS3-201ENST00000437679 VWA5B2Q8N398 1253 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 ZFP62Q8NB50 900 aaPredicted RBP14.04□□□□□ -0.16
LIMS3-201ENST00000437679 CDC26Q8NHZ8 85 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 FAM76AQ8TAV0 307 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 C11orf24Q96F05 449 aaPredicted RBP14.04□□□□□ -0.16
LIMS3-201ENST00000437679 CNRIP1Q96F85 164 aaPredicted RBP14.04□□□□□ -0.16
LIMS3-201ENST00000437679 METTL2AQ96IZ6 378 aaKnown RBP14.04□□□□□ -0.16
LIMS3-201ENST00000437679 MAGED4Q96JG8 741 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 MECRQ9BV79 373 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 SACM1LQ9NTJ5 587 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 ENTPD4Q9Y227 616 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 CFL2Q9Y281 166 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 FIS1Q9Y3D6 152 aa14.04□□□□□ -0.16
LIMS3-201ENST00000437679 CAPN14A8MX76 684 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 CTIFO43310 598 aaKnown RBP14.03□□□□□ -0.16
LIMS3-201ENST00000437679 RGS14O43566 566 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 WISP2O76076 250 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 NADKO95544 446 aaPredicted RBP14.03□□□□□ -0.16
LIMS3-201ENST00000437679 RNF224P0DH78 156 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 CREB1P16220 341 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 CNR1P21554 472 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 RFC3P40938 356 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 NR0B1P51843 470 aaKnown RBP14.03□□□□□ -0.16
LIMS3-201ENST00000437679 PLGLB1Q02325 96 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 C2orf80Q0P641 193 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 MAP4K2Q12851 820 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 PRICKLE4Q2TBC4 344 aa14.03□□□□□ -0.16
LIMS3-201ENST00000437679 ZNF791Q3KP31 576 aaPredicted RBP14.03□□□□□ -0.16
LIMS3-201ENST00000437679 RNFT1Q5M7Z0 435 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms