RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 LRRC74AQ0VAA2 488 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 NCF4Q15080 339 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 CNKSR3Q6P9H4 555 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 SLC39A5Q6ZMH5 540 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 FAM20CQ8IXL6 584 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 LINC01555Q8NAE3 123 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 CREB3L4Q8TEY5 395 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 TMEM203Q969S6 136 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 TMEM80Q96HE8 168 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 MSLNLQ96KJ4 702 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 TREX2Q9BQ50 279 aaPredicted RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 MACROD1Q9BQ69 325 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 QRSL1Q9H0R6 528 aaKnown RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 RHBGQ9H310 441 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ANKRA2Q9H9E1 313 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ITGB1BP2Q9UKP3 347 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 HCN2Q9UL51 889 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ANGPT4Q9Y264 503 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 GPR55Q9Y2T6 319 aaPredicted RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 A0A0G2JN53 185 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 POP7O75817 140 aaKnown RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 MED26O95402 600 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 LRG1P02750 347 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 THY1P04216 161 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 CHRM4P08173 479 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 POLR2EP19388 210 aaKnown RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 WDR5P61964 334 aaKnown RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 OLR1P78380 273 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 CDK5Q00535 292 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 GPR19Q15760 415 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ZNF284Q2VY69 593 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 RNLSQ5VYX0 342 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 UNC5DQ6UXZ4 953 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 DEF8Q6ZN54 512 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 OR6T1Q8NGN1 323 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 SLC25A46Q96AG3 418 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 LINC00615Q96LM1 132 aaPredicted RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 ZNF354BQ96LW1 612 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ZNF582Q96NG8 517 aaPredicted RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 CCDC32Q9BV29 185 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 EGLN3Q9H6Z9 239 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ZNF556Q9HAH1 456 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 PAK6Q9NQU5 681 aaPredicted RBP9.33□□□□□ -0.92
SS18-203ENST00000415083 TDP1Q9NUW8 608 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 ZSCAN32Q9NX65 697 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 FBXW2Q9UKT8 454 aa9.33□□□□□ -0.92
SS18-203ENST00000415083 MMP20O60882 483 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 UGT2B17O75795 530 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 FAM157BP0CG42 384 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 XKP51811 444 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 TAB1Q15750 504 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 OCLNQ16625 522 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 FAM214AQ32MH5 1076 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 KHDRBS2Q5VWX1 349 aaKnown RBP9.32□□□□□ -0.92
SS18-203ENST00000415083 SHFQ7M4L6 423 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 TRAPPC5Q8IUR0 188 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 MMAAQ8IVH4 418 aaKnown RBP9.32□□□□□ -0.92
SS18-203ENST00000415083 TBC1D19Q8N5T2 526 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 KLHL31Q9H511 634 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 CTPS2Q9NRF8 586 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 STUB1Q9UNE7 303 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 PNMA8CA0A1B0GUJ8 204 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 ANKDD1BA6NHY2 528 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 TLX2O43763 284 aaPredicted RBP9.32□□□□□ -0.92
SS18-203ENST00000415083 SRPRAP08240 638 aaKnown RBP9.32□□□□□ -0.92
SS18-203ENST00000415083 DDX5P17844 614 aaKnown RBP9.32□□□□□ -0.92
SS18-203ENST00000415083 S100A1P23297 94 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 SLC6A11P48066 632 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 SPANXN2Q5MJ10 180 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 PRAMEF14Q5SWL7 426 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 C9orf64Q5T6V5 341 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 PRAMEF13Q5VWM6 474 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 C22orf42Q6IC83 251 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 IKBIPQ70UQ0 350 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 KLHL6Q8WZ60 621 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 PIK3R3Q92569 461 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 DEFB118Q96PH6 123 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 FYTTD1Q96QD9 318 aaKnown RBP9.32□□□□□ -0.92
SS18-203ENST00000415083 TM9SF2Q99805 663 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 SOSTQ9BQB4 213 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 C11orf54Q9H0W9 315 aaPredicted RBP9.32□□□□□ -0.92
SS18-203ENST00000415083 GLIPR2Q9H4G4 154 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 LIPT1Q9Y234 373 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 DYRK1BQ9Y463 629 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 PCDHGB2Q9Y5G2 931 aa9.32□□□□□ -0.92
SS18-203ENST00000415083 IQCMA0A1B0GVH7 501 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 OR10H3O60404 316 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 TBX19O60806 448 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 GUCY1B2O75343 617 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 CDRT1O95170 752 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 KRT75O95678 551 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 EPHX1P07099 455 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 C6P13671 934 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 CPEP16870 476 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 TNNI3P19429 210 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 CA8P35219 290 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 KIR2DL3P43628 341 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 BNC1Q01954 994 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 MAP4K2Q12851 820 aa9.31□□□□□ -0.92
SS18-203ENST00000415083 TARDBPQ13148 414 aaKnown RBP eCLIP9.31□□□□□ -0.929e-9■■■□□ 18.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms