RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 ERVK-19Q9WJR5 959 aa13.62□□□□□ -0.23
LIMS1-206ENST00000414829 PCDHGB6Q9Y5F9 930 aa13.62□□□□□ -0.23
LIMS1-206ENST00000414829 NBEAQ8NFP9 2946 aa13.62□□□□□ -0.23
LIMS1-206ENST00000414829 ATP6AP2A0A1C7CYW4 349 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 SLC28A2O43868 658 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 PRAMEF2O60811 474 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 ATP6AP2O75787 350 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 SORBS2O94875 1100 aaKnown RBP13.61□□□□□ -0.23
LIMS1-206ENST00000414829 PRB1P04280 392 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 BCKDHAP12694 445 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 CD46P15529 392 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 PRPS1L1P21108 318 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 FEN1P39748 380 aaKnown RBP13.61□□□□□ -0.23
LIMS1-206ENST00000414829 HLCSP50747 726 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 RNF4P78317 190 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 OCRLQ01968 901 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 EMX2Q04743 252 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 FUT7Q11130 342 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 MAP4K2Q12851 820 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 CEBPEQ15744 281 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 MPEG1Q2M385 716 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 NADK2Q4G0N4 442 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 C6orf136Q5SQH8 315 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 CES4AQ5XG92 561 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 HLA-DQA1Q5Y7H0 255 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 RPUSD3Q6P087 351 aaKnown RBP13.61□□□□□ -0.23
LIMS1-206ENST00000414829 OPN5Q6U736 354 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 TICAM1Q8IUC6 712 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 TAGAPQ8N103 731 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 TMEM156Q8N614 296 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 SLC15A4Q8N697 577 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 TMEM178AQ8NBL3 297 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 FAM98AQ8NCA5 519 aaKnown RBP13.61□□□□□ -0.23
LIMS1-206ENST00000414829 ZNF75CPQ92670 426 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-206ENST00000414829 PPWD1Q96BP3 646 aaKnown RBP13.61□□□□□ -0.23
LIMS1-206ENST00000414829 CNRIP1Q96F85 164 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-206ENST00000414829 BRINP2Q9C0B6 783 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 TRIM45Q9H8W5 580 aaPredicted RBP13.61□□□□□ -0.23
LIMS1-206ENST00000414829 MEAF6Q9HAF1 191 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 HEY2Q9UBP5 337 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 PRODH2Q9UF12 536 aa13.61□□□□□ -0.23
LIMS1-206ENST00000414829 TLN1Q9Y490 2541 aaKnown RBP13.61□□□□□ -0.23
LIMS1-206ENST00000414829 COL6A6A6NMZ7 2263 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 TTLL8A6PVC2 850 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 A8MVJ9 347 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 CAPN14A8MX76 684 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 PDPK1O15530 556 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 COQ9O75208 318 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 ITGA10O75578 1167 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 LBPP18428 481 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 TMED10P49755 219 aaKnown RBP13.6□□□□□ -0.23
LIMS1-206ENST00000414829 SLC37A1P57057 533 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 TUBA3CQ13748 450 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 PRICKLE4Q2TBC4 344 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 FAM219BQ5XKK7 198 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 FCRLBQ6BAA4 426 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 TUBA3EQ6PEY2 450 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 WDR75Q8IWA0 830 aaKnown RBP13.6□□□□□ -0.23
LIMS1-206ENST00000414829 MMP21Q8N119 569 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 PIWIL2Q8TC59 973 aaKnown RBP13.6□□□□□ -0.23
LIMS1-206ENST00000414829 ASB15Q8WXK1 588 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 ZNF681Q96N22 645 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 TSSK3Q96PN8 268 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 MFRPQ9BY79 579 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 NUF2Q9BZD4 464 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 C20orf27Q9GZN8 174 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 AGPAT4Q9NRZ5 378 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 HPF1Q9NWY4 346 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 ZNF223Q9UK11 482 aaPredicted RBP13.6□□□□□ -0.23
LIMS1-206ENST00000414829 PCDHGA10Q9Y5H3 936 aa13.6□□□□□ -0.23
LIMS1-206ENST00000414829 ATRXP46100 2492 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 PIEZO2Q9H5I5 2752 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 MYOCOSA0A1B0GUC4 107 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 CD97P48960 835 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 NCBP2P52298 156 aaKnown RBP eCLIP13.59□□□□□ -0.23
LIMS1-206ENST00000414829 NRG3P56975 720 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 C21orf58P58505 322 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 DCAF7P61962 342 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 PDE7AQ13946 482 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 EBPQ15125 230 aaKnown RBP13.59□□□□□ -0.23
LIMS1-206ENST00000414829 OR1C1Q15619 314 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 IL23RQ5VWK5 629 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 OGFOD2Q6N063 350 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 LIX1Q8N485 282 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 THAP3Q8WTV1 239 aaPredicted RBP13.59□□□□□ -0.23
LIMS1-206ENST00000414829 TP53INP1Q96A56 240 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 CTHRC1Q96CG8 243 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 SGCZQ96LD1 299 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 C3orf30Q96M34 536 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 GAL3ST4Q96RP7 486 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 WWTR1Q9GZV5 400 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 OR10A5Q9H207 317 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 ZBTB20Q9HC78 741 aaPredicted RBP13.59□□□□□ -0.23
LIMS1-206ENST00000414829 ACSS1Q9NUB1 689 aaPredicted RBP13.59□□□□□ -0.23
LIMS1-206ENST00000414829 ZNF446Q9NWS9 450 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 MAT2BQ9NZL9 334 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 LRFN1Q9P244 771 aa13.59□□□□□ -0.23
LIMS1-206ENST00000414829 A0A087WV62 115 aa13.58□□□□□ -0.24
LIMS1-206ENST00000414829 C2orf92A0A1B0GVN3 265 aa13.58□□□□□ -0.24
LIMS1-206ENST00000414829 WASHC1A8K0Z3 465 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms