RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 ADCY4Q8NFM4 1077 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 OR1N1Q8NGS0 311 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 OR9A2Q8NGT5 310 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 ELP5Q8TE02 316 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 DOK4Q8TEW6 326 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 ZNF721Q8TF20 911 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 EXTL1Q92935 676 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 NCLNQ969V3 563 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 SENP5Q96HI0 755 aaPredicted RBP27.35■■□□□ 1.97
USP42-202ENST00000404008 BHLHE41Q9C0J9 482 aaPredicted RBP27.35■■□□□ 1.97
USP42-202ENST00000404008 OR8D2Q9GZM6 311 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 FAM107BQ9H098 131 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 GLIPR2Q9H4G4 154 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 MAT2BQ9NZL9 334 aa27.35■■□□□ 1.97
USP42-202ENST00000404008 COPG1Q9Y678 874 aaKnown RBP27.35■■□□□ 1.97
USP42-202ENST00000404008 SLC22A3O75751 556 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 IL12AP29459 219 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 ATP4BP51164 291 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 STX1BP61266 288 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 AP2B1P63010 937 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 MAP4K2Q12851 820 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 DPY19L1Q2PZI1 675 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 PGS1Q32NB8 556 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 ZNF628Q5EBL2 1059 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 METTL21CQ5VZV1 264 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 CPLX4Q7Z7G2 160 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 NATD1Q8N6N6 113 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 ZNF321PQ8N8H1 164 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 OR8J2Q8NGG1 315 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 ZNF675Q8TD23 568 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 VMP1Q96GC9 406 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 THOC3Q96J01 351 aaKnown RBP27.34■■□□□ 1.97
USP42-202ENST00000404008 ART5Q96L15 291 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 DUSP26Q9BV47 211 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 SEMA4CQ9C0C4 833 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 ADAM21Q9UKJ8 722 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 ERVK-19Q9WJR5 959 aa27.34■■□□□ 1.97
USP42-202ENST00000404008 IGKV3-11P04433 115 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 ITGAMP11215 1152 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 GPX3P22352 226 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 ITGA3P26006 1051 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 SOX18P35713 384 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 CCL11P51671 97 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 SRSF11Q05519 484 aaKnown RBP27.33■■□□□ 1.97
USP42-202ENST00000404008 ZNF267Q14586 743 aaPredicted RBP27.33■■□□□ 1.97
USP42-202ENST00000404008 C6orf163Q5TEZ5 329 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 SPATA21Q7Z572 469 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 KIF2BQ8N4N8 673 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 GLB1L3Q8NCI6 653 aaPredicted RBP27.33■■□□□ 1.97
USP42-202ENST00000404008 CTHRC1Q96CG8 243 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 ZBED6CLQ96FA7 236 aaPredicted RBP27.33■■□□□ 1.97
USP42-202ENST00000404008 ELAC2Q9BQ52 826 aaKnown RBP27.33■■□□□ 1.97
USP42-202ENST00000404008 CNPPD1Q9BV87 410 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 LHPPQ9H008 270 aa27.33■■□□□ 1.97
USP42-202ENST00000404008 ACSS1Q9NUB1 689 aaPredicted RBP27.33■■□□□ 1.97
USP42-202ENST00000404008 ZNF223Q9UK11 482 aaPredicted RBP27.33■■□□□ 1.97
USP42-202ENST00000404008 SHOX2O60902 331 aaPredicted RBP27.32■■□□□ 1.96
USP42-202ENST00000404008 CEACAM4O75871 244 aa27.32■■□□□ 1.96
USP42-202ENST00000404008 NCF2P19878 526 aaPredicted RBP27.32■■□□□ 1.96
USP42-202ENST00000404008 SPANXN4Q5MJ08 99 aa27.32■■□□□ 1.96
USP42-202ENST00000404008 JMJD6Q6NYC1 403 aaPredicted RBP27.32■■□□□ 1.96
USP42-202ENST00000404008 FAM111BQ6SJ93 734 aa27.32■■□□□ 1.96
USP42-202ENST00000404008 VWA5B2Q8N398 1253 aa27.32■■□□□ 1.96
USP42-202ENST00000404008 ZBTB18Q99592 522 aa27.32■■□□□ 1.96
USP42-202ENST00000404008 NUDT9Q9BW91 350 aa27.32■■□□□ 1.96
USP42-202ENST00000404008 ZNF385DQ9H6B1 395 aa27.32■■□□□ 1.96
USP42-202ENST00000404008 COPS7AQ9UBW8 275 aa27.32■■□□□ 1.96
USP42-202ENST00000404008 ZNF639Q9UID6 485 aa27.32■■□□□ 1.96
USP42-202ENST00000404008 A6NL46 340 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 C9JVG2 144 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 S1PR1P21453 382 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 KIR3DL1P43629 444 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 ZFP36L2P47974 494 aaKnown RBP27.31■■□□□ 1.96
USP42-202ENST00000404008 CLCN2P51788 898 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 FUT7Q11130 342 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 SQLEQ14534 574 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 MLC1Q15049 377 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 FAM174BQ3ZCQ3 159 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 PAOXQ6QHF9 649 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 ZNF551Q7Z340 670 aaPredicted RBP27.31■■□□□ 1.96
USP42-202ENST00000404008 OR9I1Q8NGQ6 314 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 ZFP28Q8NHY6 868 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 EPN3Q9H201 632 aa27.31■■□□□ 1.96
USP42-202ENST00000404008 CPAMD8Q8IZJ3 1885 aa27.3■■□□□ 1.96
USP42-202ENST00000404008 SLITRK5O94991 958 aa27.3■■□□□ 1.96
USP42-202ENST00000404008 CLPSP04118 112 aa27.3■■□□□ 1.96
USP42-202ENST00000404008 EFNA1P20827 205 aaPredicted RBP27.3■■□□□ 1.96
USP42-202ENST00000404008 MANFP55145 182 aaKnown RBP27.3■■□□□ 1.96
USP42-202ENST00000404008 WNT3P56703 355 aa27.3■■□□□ 1.96
USP42-202ENST00000404008 MRPS35P82673 323 aaKnown RBP27.3■■□□□ 1.96
USP42-202ENST00000404008 HSPB3Q12988 150 aa27.3■■□□□ 1.96
USP42-202ENST00000404008 OR4F3Q6IEY1 312 aa27.3■■□□□ 1.96
USP42-202ENST00000404008 BRIX1Q8TDN6 353 aaKnown RBP27.3■■□□□ 1.96
USP42-202ENST00000404008 PSMF1Q92530 271 aa27.3■■□□□ 1.96
USP42-202ENST00000404008 KAT2AQ92830 837 aa27.3■■□□□ 1.96
USP42-202ENST00000404008 KMT2BQ9UMN6 2715 aaPredicted RBP27.29■■□□□ 1.96
USP42-202ENST00000404008 TRBV11-1A0A0K0K1C0 115 aa27.29■■□□□ 1.96
USP42-202ENST00000404008 A0A1W2PRB8 838 aa27.29■■□□□ 1.96
USP42-202ENST00000404008 SSTR4P31391 388 aa27.29■■□□□ 1.96
USP42-202ENST00000404008 POLE2P56282 527 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms