RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ARMC1Q9NVT9 282 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 ADPRHL2Q9NX46 363 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 ADGRE2Q9UHX3 823 aa9.76□□□□□ -0.85
COL6A3-205ENST00000392004 IGHV5-51A0A0C4DH38 117 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 hCG_2039718K7EN88 272 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 E2F3O00716 465 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 GAPDHSO14556 408 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 EEDO75530 441 aaKnown RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 LDLRP01130 860 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 CCKBRP32239 447 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 BCL6P41182 706 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 LIPEQ05469 1076 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 ZIK1Q3SY52 487 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 DEPDC1Q5TB30 811 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 MMP21Q8N119 569 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 BPIFB6Q8NFQ5 453 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 PHOSPHO1Q8TCT1 267 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 ZUFSPQ96AP4 578 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 ROGDIQ9GZN7 287 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 OAZ3Q9UMX2 235 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 ERGIC3Q9Y282 383 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 LOXL2Q9Y4K0 774 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 SNX5Q9Y5X3 404 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 KLK10O43240 276 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 MTHFD2P13995 350 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 MAOAP21397 527 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 CCL11P51671 97 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 RGS8P57771 180 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 CSNK1G2P78368 415 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 BCL7AQ4VC05 210 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 TCTE1Q5JU00 501 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 HES3Q5TGS1 186 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 OR2L8Q8NGY9 312 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 GRHL3Q8TE85 626 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 ROPN1LQ96C74 230 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 PHOX2BQ99453 314 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 SLC29A3Q9BZD2 475 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 NAA50Q9GZZ1 169 aaKnown RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 SPNS1Q9H2V7 528 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 METTL7AQ9H8H3 244 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 USP36Q9P275 1121 aaKnown RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 PHF11Q9UIL8 331 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 SPG11Q96JI7 2443 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 NPIPA5A0A0B4J1W7 369 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 DYTNA2CJ06 578 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 NPIPA7E9PJI5 369 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 TMX2-CTNND1H3BSU7 103 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 EI24O14681 340 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 GPR37L1O60883 481 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 CLPXO76031 633 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 OR6A2O95222 327 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 NPIPA8P0DM63 369 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 RPS9P46781 194 aaKnown RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 ACVR1Q04771 509 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 GNA13Q14344 377 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 C6orf132Q5T0Z8 1188 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 LSMEM2Q8N112 164 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 RAB2BQ8WUD1 216 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 RIT1Q92963 219 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 DUS3LQ96G46 650 aaKnown RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 SCN2AQ99250 2005 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 HOPXQ9BPY8 73 aaPredicted RBP9.75□□□□□ -0.85
COL6A3-205ENST00000392004 TUBA1CQ9BQE3 449 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 RXFP3Q9NSD7 469 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 MKLN1Q9UL63 735 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 ERVK-19Q9WJR5 959 aa9.75□□□□□ -0.85
COL6A3-205ENST00000392004 MYO16Q9Y6X6 1858 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TRIOO75962 3097 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TLCD2A6NGC4 264 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 IFNA14P01570 189 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 S100A1P23297 94 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 NR0B1P51843 470 aaKnown RBP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TMBIM6P55061 237 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 BIKQ13323 160 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 LRRC69Q6ZNQ3 347 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 OLIG3Q7RTU3 272 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TMEM151BQ8IW70 566 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 GALNT12Q8IXK2 581 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 OR9A2Q8NGT5 310 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 MAL2Q969L2 176 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 C1GALT1Q9NS00 363 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 TEX10Q9NXF1 929 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 SH2B3Q9UQQ2 575 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 LYVE1Q9Y5Y7 322 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 BBIP1A8MTZ0 92 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 CLDN25C9JDP6 229 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 FLRT2O43155 660 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 DFNA5O60443 496 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 DEAF1O75398 565 aaPredicted RBP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 PSIP1O75475 530 aaKnown RBP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 SLC25A12O75746 678 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 ZNF24P17028 368 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 CD247P20963 164 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 CNR2P34972 360 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 CLK3P49761 638 aaKnown RBP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 RAD23AP54725 363 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 SLC36A3Q495N2 470 aa9.74□□□□□ -0.85
COL6A3-205ENST00000392004 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.74□□□□□ -0.85
COL6A3-205ENST00000392004 GLYATQ6IB77 296 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms