RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MRPS2Q9Y399 296 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 FGD5Q6ZNL6 1462 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 IGHV3-38A0A0C4DH36 116 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ARHGAP42A6NI28 874 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TMCO5BA8MYB1 307 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 C19orf81C9J6K1 198 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NEDD8-MDP1E9PL57 170 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF749O43361 778 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NME2P1O60361 137 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 GALR3O60755 368 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ANXA9O76027 345 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 OR6B1O95007 311 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 OR6A2O95222 327 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CD1DP15813 335 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CCNA2P20248 432 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ACP1P24666 158 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 RPA1P27694 616 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 AKT2P31751 481 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ACADSBP45954 432 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 MTIF2P46199 727 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TKTL1P51854 596 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NDST2P52849 883 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ABCE1P61221 599 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 RPL27P61353 136 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ERVK-16P61578 105 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 HSPA14Q0VDF9 509 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 KIAA0141Q14154 515 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 P2RY14Q15391 338 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 MLF2Q15773 248 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 CDC42EP5Q6NZY7 148 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NEK5Q6P3R8 708 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ZCCHC12Q6PEW1 402 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ADGRD2Q7Z7M1 963 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 KCNMB4Q86W47 210 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 C17orf64Q86WR6 236 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TBC1D10CQ8IV04 446 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 HDDC3Q8N4P3 179 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 SUMF1Q8NBK3 374 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 OR10G7Q8NGN6 311 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NPRL2Q8WTW4 380 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TMEM186Q96B77 213 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 C16orf58Q96GQ5 468 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 COG3Q96JB2 828 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 FAM111AQ96PZ2 611 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 ALKBH3Q96Q83 286 aaPredicted RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TNFRSF13CQ96RJ3 184 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 RAB40CQ96S21 281 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 COQ7Q99807 217 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 SIRPDQ9H106 197 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 PARLQ9H300 379 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 TUBB1Q9H4B7 451 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 WDR41Q9HAD4 459 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 HOMER3Q9NSC5 361 aa1.7□□□□□ -2.14
VPS13A-206ENST00000376646 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 HOOK1Q9UJC3 728 aaKnown RBP1.7□□□□□ -2.14
VPS13A-206ENST00000376646 NPC1L1Q9UHC9 1359 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 IGHV4-30-2A0A087WSY4 118 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 TMEM89A2RUT3 159 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 GPRIN2O60269 458 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 SYNGR4O95473 234 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 PTBP3O95758 552 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 TGFAP01135 160 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 PROS1P07225 676 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 FHP07954 510 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ZCCHC18P0CG32 403 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 GHRP10912 638 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 GNSP15586 552 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 FCARP24071 287 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 PRDX6P30041 224 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 PKLRP30613 574 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ZFP36L2P47974 494 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ATP4BP51164 291 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CCL11P51671 97 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 BTG3Q14201 252 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 GAMTQ14353 236 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 KARSQ15046 597 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 HERC4Q5GLZ8 1057 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 TOR1AIP1Q5JTV8 583 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 LIPJQ5W064 366 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 REG3GQ6UW15 175 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 Q6ZRG5 221 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 TMEM26Q6ZUK4 368 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ITIH5Q86UX2 942 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 MRPL43Q8N983 215 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 PCNPQ8WW12 178 aaKnown RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 TCP11Q8WWU5 503 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 C1orf147Q96MC9 270 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 TAAR6Q96RI8 345 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 SPAG8Q99932 426 aaPredicted RBP1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CHCHD5Q9BSY4 110 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 HSD3B7Q9H2F3 369 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 SLC25A19Q9HC21 320 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 VPS54Q9P1Q0 977 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ERVK-18Q9QC07 812 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CLIP2Q9UDT6 1046 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CELA1Q9UNI1 258 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 RAD54L2Q9Y4B4 1467 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 LOC390937A0A1W2PQ73 354 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 ZNF840PA6NDX5 716 aa1.69□□□□□ -2.14
VPS13A-206ENST00000376646 CHEK1O14757 476 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms