RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 C9orf106Q8NAJ2 232 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 SPPL2AQ8TCT8 520 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 NANOS1Q8WY41 292 aaKnown RBP12.65□□□□□ -0.38
VPS29-201ENST00000360579 RIT1Q92963 219 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 TP53INP1Q96A56 240 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 CENPKQ9BS16 269 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 TMEM79Q9BSE2 394 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 ERVK-6Q9BXR3 956 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 ANGPTL4Q9BY76 406 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 POPDC3Q9HBV1 291 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 SNX15Q9NRS6 342 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 FETUBQ9UGM5 382 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 PHF11Q9UIL8 331 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 ERVK-19Q9WJR5 959 aa12.65□□□□□ -0.38
VPS29-201ENST00000360579 FBN1P35555 2871 aaKnown RBP12.64□□□□□ -0.39
VPS29-201ENST00000360579 ZANQ9Y493 2812 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 C2orf92A0A1B0GVN3 265 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 FAM95CA0A1B0GW59 222 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 INAFM1C9JVW0 142 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 RTCAO00442 366 aaKnown RBP12.64□□□□□ -0.39
VPS29-201ENST00000360579 SMAD7O15105 426 aaKnown RBP12.64□□□□□ -0.39
VPS29-201ENST00000360579 BANF1O75531 89 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 RCBTB2O95199 551 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 CDC25BP30305 580 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 GALNSP34059 522 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 BUD31P41223 144 aaPredicted RBP12.64□□□□□ -0.39
VPS29-201ENST00000360579 CASP2P42575 452 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 NRG3P56975 720 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 TNFRSF17Q02223 184 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 IRF8Q02556 426 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 PCDH1Q08174 1060 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 GAB1Q13480 694 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 FRG1Q14331 258 aaKnown RBP12.64□□□□□ -0.39
VPS29-201ENST00000360579 ZNF267Q14586 743 aaPredicted RBP12.64□□□□□ -0.39
VPS29-201ENST00000360579 ZNF460Q14592 562 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 MSS51Q4VC12 460 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 HLA-DQA1Q5Y7H0 255 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 SULT1C3Q6IMI6 304 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 DGAT2L6Q6ZPD8 337 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 GPR180Q86V85 440 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 ZC3HC1Q86WB0 502 aaKnown RBP12.64□□□□□ -0.39
VPS29-201ENST00000360579 IGDCC3Q8IVU1 814 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 PDIK1LQ8N165 341 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 SPC24Q8NBT2 197 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 ZNF473Q8WTR7 871 aaKnown RBP12.64□□□□□ -0.39
VPS29-201ENST00000360579 ANKRD49Q8WVL7 239 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 CMTM7Q96FZ5 175 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 CFAP36Q96G28 342 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 TMEM41AQ96HV5 264 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 PBKQ96KB5 322 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 GNRHR2Q96P88 292 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 CCL19Q99731 98 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 DERL2Q9GZP9 239 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 TESMINQ9Y4I5 508 aa12.64□□□□□ -0.39
VPS29-201ENST00000360579 GOLGA6L10A0A0M3HER8 536 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 DNALI1O14645 258 aaPredicted RBP12.63□□□□□ -0.39
VPS29-201ENST00000360579 TAPBPO15533 448 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 PRAMEF4O60810 478 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 GPR75O95800 540 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 CPN1P15169 458 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 CD22P20273 847 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 CASP3P42574 277 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 HSPA7P48741 367 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 SLC12A2P55011 1212 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 FBXW4P57775 412 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 TAS2R39P59534 338 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 CHIT1Q13231 466 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 SLAMF1Q13291 335 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 EIPR1Q53HC9 387 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 WIPI1Q5MNZ9 446 aaPredicted RBP12.63□□□□□ -0.39
VPS29-201ENST00000360579 DCST1Q5T197 706 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 FNDC7Q5VTL7 733 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 PRAMEF9Q5VWM5 478 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 KHDRBS2Q5VWX1 349 aaKnown RBP12.63□□□□□ -0.39
VPS29-201ENST00000360579 TIGD3Q6B0B8 471 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 OR4C11Q6IEV9 310 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 TRMT10BQ6PF06 316 aaKnown RBP12.63□□□□□ -0.39
VPS29-201ENST00000360579 C20orf204Q6ZNR8 217 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 GPSM1Q86YR5 675 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 LAS2Q8IYD9 372 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 ZNF441Q8N8Z8 693 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 UCN3Q969E3 161 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 LRRC39Q96DD0 335 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 PLAC1Q9HBJ0 212 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 TEX10Q9NXF1 929 aaPredicted RBP12.63□□□□□ -0.39
VPS29-201ENST00000360579 ZNF226Q9NYT6 803 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 ASIC3Q9UHC3 531 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 ADGRE2Q9UHX3 823 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 PACSIN3Q9UKS6 424 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 NPFFR2Q9Y5X5 522 aa12.63□□□□□ -0.39
VPS29-201ENST00000360579 NCKAP5O14513 1909 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 A8MXE2 369 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 H0Y3Z8 333 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 PGRMC1O00264 195 aaKnown RBP12.62□□□□□ -0.39
VPS29-201ENST00000360579 TGFB1P01137 390 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 PCNAP12004 261 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 CHMP24386 653 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 ELK3P41970 407 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 PCYT1AP49585 367 aa12.62□□□□□ -0.39
VPS29-201ENST00000360579 RAP1GDS1P52306 607 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms