RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 TMEM94Q12767 1356 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ASTN1O14525 1302 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ARVCFO00192 962 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 NIPSNAP2O75323 286 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ZNF33AQ06730 810 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 MYLK3Q32MK0 819 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 METTL11BQ5VVY1 283 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 IDO2Q6ZQW0 420 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 GPR155Q7Z3F1 870 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 HS3ST5Q8IZT8 346 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ZNF416Q9BWM5 594 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 FCF1Q9Y324 198 aaKnown RBP12.32□□□□□ -0.44
USP47-202ENST00000339865 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.32□□□□□ -0.44
USP47-202ENST00000339865 RPS12P25398 132 aaKnown RBP12.32□□□□□ -0.44
USP47-202ENST00000339865 MRPS6P82932 125 aaKnown RBP12.32□□□□□ -0.44
USP47-202ENST00000339865 DHCR24Q15392 516 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 KDM8Q8N371 416 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ATOH1Q92858 354 aaPredicted RBP12.32□□□□□ -0.44
USP47-202ENST00000339865 FKBPLQ9UIM3 349 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 YY2O15391 372 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 POP4O95707 220 aaKnown RBP12.32□□□□□ -0.44
USP47-202ENST00000339865 GAAP10253 952 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 NFATC2Q13469 925 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 RAB11BQ15907 218 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ARHGAP11BQ3KRB8 267 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 SLC27A4Q6P1M0 643 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 C1orf52Q8N6N3 182 aaKnown RBP12.32□□□□□ -0.44
USP47-202ENST00000339865 SPRYD4Q8WW59 207 aaPredicted RBP12.32□□□□□ -0.44
USP47-202ENST00000339865 TOMM40LQ969M1 308 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 SLC22A18Q96BI1 424 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 BIRC7Q96CA5 298 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 RXFP3Q9NSD7 469 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 TAS2R16Q9NYV7 291 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 MED14O60244 1454 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 TMEM233B4DJY2 109 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ADAM10O14672 748 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ESR1P03372 595 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ADRA1BP35368 520 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 POU3F4P49335 361 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 PRAMEF14Q5SWL7 426 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 DPY19L2P1Q6NXN4 242 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 KANSL1Q7Z3B3 1105 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 IL25Q9H293 177 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 SLC17A6Q9P2U8 582 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 COPS3Q9UNS2 423 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 NPC1O15118 1278 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 MED6O75586 246 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 RHCEP18577 417 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 MALLQ13021 153 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 TSTD2Q5T7W7 516 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ARHGAP40Q5TG30 622 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 TRMT10BQ6PF06 316 aaKnown RBP12.32□□□□□ -0.44
USP47-202ENST00000339865 PSMG2Q969U7 264 aa12.32□□□□□ -0.44
USP47-202ENST00000339865 ABCA8O94911 1581 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 CARNS1A5YM72 827 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 PTBP3O95758 552 aaKnown RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 TRAM2Q15035 370 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 MON1BQ7L1V2 547 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 ALDH16A1Q8IZ83 802 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 SLC35F5Q8WV83 523 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 UFSP2Q9NUQ7 469 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 TDP1Q9NUW8 608 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 CXXC1Q9P0U4 656 aaPredicted RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 FZD1Q9UP38 647 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 ERVW-1Q9UQF0 538 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 NAALAD2Q9Y3Q0 740 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 C2orf78A6NCI8 922 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 TMEM88BA6NKF7 163 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 PRPH2P23942 346 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 HK3P52790 923 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 MRPS34P82930 218 aaKnown RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 CAPSQ13938 189 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 REEP6Q96HR9 211 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 SNX27Q96L92 541 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 OR52B2Q96RD2 323 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 CYP2S1Q96SQ9 504 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 MMP28Q9H239 520 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 SRA1Q9HD15 236 aaKnown RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 ZIM2Q9NZV7 527 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 KLHL9Q9P2J3 617 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 LGALS2P05162 132 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 RPL26P61254 145 aaKnown RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 SPHARQ15513 63 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 YIF1BQ5BJH7 314 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 VWA5B2Q8N398 1253 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 CD99L2Q8TCZ2 262 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 EBF1Q9UH73 591 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 TMEM2Q9UHN6 1383 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 ZNF780AO75290 641 aaPredicted RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 PTPRAP18433 802 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 ETFRF1Q6IPR1 90 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 PAQR3Q6TCH7 311 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 OR1E3Q8WZA6 343 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 PITHD1Q9GZP4 211 aaPredicted RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 SOX17Q9H6I2 414 aaPredicted RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.31□□□□□ -0.44
USP47-202ENST00000339865 ABRACLQ9P1F3 81 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 PI4KAP42356 2102 aa12.31□□□□□ -0.44
USP47-202ENST00000339865 FHP07954 510 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms