RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 KCNC3Q14003 757 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 GRM7Q14831 915 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 PRSS53Q2L4Q9 553 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 MEDAGQ5VYS4 303 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 RAET1GQ6H3X3 334 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 TSPAN33Q86UF1 283 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 MMP21Q8N119 569 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 HSD17B8Q92506 261 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 AP3S1Q92572 193 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 SLC9A6Q92581 669 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 MVB12BQ9H7P6 319 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 GKN1Q9NS71 199 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 EXTL2Q9UBQ6 330 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 STOML2Q9UJZ1 356 aa12.77□□□□□ -0.37
CCDC88C-201ENST00000331194 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 MGAT4DA6NG13 374 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 TOR1AO14656 332 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 MTX2O75431 263 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 PRPH2P23942 346 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 SLC6A1P30531 599 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 CHI3L1P36222 383 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 CSNK1DP48730 415 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 ANGPT1Q15389 498 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 SYT14P1Q58G82 188 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 MTFR2Q6P444 385 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 CERS6Q6ZMG9 384 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 DEF8Q6ZN54 512 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 L3MBTL4Q8NA19 623 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 ST8SIA4Q92187 359 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 RBPMSQ93062 196 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 GIMAP5Q96F15 307 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 SMAD5Q99717 465 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 ZFYVE1Q9HBF4 777 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 C1GALT1Q9NS00 363 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 CLEC4AQ9UMR7 237 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 SLC9A8Q9Y2E8 581 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 TDRD15B5MCY1 1934 aaKnown RBP12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 C17orf102A2RUQ5 167 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 LGALS8O00214 317 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 IFNW1P05000 195 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 RRASP10301 218 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 IRS1P35568 1242 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 SOAT1P35610 550 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 BHLHB9Q6PI77 547 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 NCEH1Q6PIU2 408 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 TMEM107Q6UX40 140 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 OLIG3Q7RTU3 272 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 GPAT4Q86UL3 456 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 NR2C2APQ86WQ0 139 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF280BQ86YH2 543 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 MARCH9Q86YJ5 346 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 IFNL1Q8IU54 200 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 MS4A15Q8N5U1 240 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 VPS37AQ8NEZ2 397 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 CREB3L1Q96BA8 519 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 RNF32Q9H0A6 362 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 FBXO44Q9H4M3 255 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 LIN7BQ9HAP6 207 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 RDH14Q9HBH5 336 aa12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 PRG3Q9Y2Y8 225 aaPredicted RBP12.76□□□□□ -0.37
CCDC88C-201ENST00000331194 EEF1E1O43324 174 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 RHCEP18577 417 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 PTX3P26022 381 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 WNT4P56705 351 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 DCDC1P59894 354 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 MAP2K5Q13163 448 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 RIN1Q13671 783 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 GPR68Q15743 365 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 PLA1AQ53H76 456 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 CCNJQ5T5M9 372 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 QSOX2Q6ZRP7 698 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 SEPT5Q99719 369 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 SLAMF7Q9NQ25 335 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 POM121CA8CG34 1229 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 RAB36O95755 333 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 IGLV3-27P01718 113 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 CELP19835 753 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 ITGALP20701 1170 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 BTCP35070 178 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 PFN3P60673 137 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 PUDPQ08623 228 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 ILKQ13418 452 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 MPEG1Q2M385 716 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 IDNKQ5T6J7 187 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 SERPINA13PQ6UXR4 307 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 OR4D11Q8NGI4 311 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 OR8J1Q8NGP2 316 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 ZNF582Q96NG8 517 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 WRAP53Q9BUR4 548 aaKnown RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 GHITMQ9H3K2 345 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 DNAJC11Q9NVH1 559 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 SIGLEC5O15389 551 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 RGS11O94810 467 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 GJB5O95377 273 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 SOD1P00441 154 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 HIST1H2AGP0C0S8 130 aaPredicted RBP12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 IRF1P10914 325 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 HIST1H2ADP20671 130 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 STOMP27105 288 aa12.75□□□□□ -0.37
CCDC88C-201ENST00000331194 CD52P31358 61 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms