RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 N4BP2Q86UW6 1770 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 SMCO3A2RU48 225 aa11□□□□□ -0.65
VPS39-201ENST00000318006 SYN1P17600 705 aa11□□□□□ -0.65
VPS39-201ENST00000318006 ADH6P28332 368 aa11□□□□□ -0.65
VPS39-201ENST00000318006 GMPRP36959 345 aa11□□□□□ -0.65
VPS39-201ENST00000318006 CLCN7P51798 805 aa11□□□□□ -0.65
VPS39-201ENST00000318006 ERVK-25P63136 954 aa11□□□□□ -0.65
VPS39-201ENST00000318006 EMX1Q04741 257 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 GK2Q14410 553 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 CYP27C1Q4G0S4 372 aa11□□□□□ -0.65
VPS39-201ENST00000318006 SLC35F1Q5T1Q4 408 aa11□□□□□ -0.65
VPS39-201ENST00000318006 ENPP7Q6UWV6 458 aa11□□□□□ -0.65
VPS39-201ENST00000318006 WASH2PQ6VEQ5 465 aa11□□□□□ -0.65
VPS39-201ENST00000318006 DGLUCYQ7Z3D6 616 aa11□□□□□ -0.65
VPS39-201ENST00000318006 PARP16Q8N5Y8 322 aa11□□□□□ -0.65
VPS39-201ENST00000318006 OR4K1Q8NGD4 311 aa11□□□□□ -0.65
VPS39-201ENST00000318006 OR52E4Q8NGH9 312 aa11□□□□□ -0.65
VPS39-201ENST00000318006 OR2AJ1Q8NGZ0 328 aa11□□□□□ -0.65
VPS39-201ENST00000318006 SNX18Q96RF0 628 aa11□□□□□ -0.65
VPS39-201ENST00000318006 TCEAL7Q9BRU2 100 aa11□□□□□ -0.65
VPS39-201ENST00000318006 NAA50Q9GZZ1 169 aaKnown RBP11□□□□□ -0.65
VPS39-201ENST00000318006 ACOT13Q9NPJ3 140 aa11□□□□□ -0.65
VPS39-201ENST00000318006 SDR39U1Q9NRG7 319 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 PCDHGA8Q9Y5G5 932 aa11□□□□□ -0.65
VPS39-201ENST00000318006 HEMK1Q9Y5R4 338 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 NUBP2Q9Y5Y2 271 aa11□□□□□ -0.65
VPS39-201ENST00000318006 RBMXP38159 391 aaKnown RBP11□□□□□ -0.65
VPS39-201ENST00000318006 MLLT10P55197 1068 aa11□□□□□ -0.65
VPS39-201ENST00000318006 RPS13P62277 151 aaKnown RBP11□□□□□ -0.65
VPS39-201ENST00000318006 LMAN2Q12907 356 aa11□□□□□ -0.65
VPS39-201ENST00000318006 BCL7AQ4VC05 210 aa11□□□□□ -0.65
VPS39-201ENST00000318006 MTFR2Q6P444 385 aa11□□□□□ -0.65
VPS39-201ENST00000318006 PGM2L1Q6PCE3 622 aa11□□□□□ -0.65
VPS39-201ENST00000318006 ADAMTS19Q8TE59 1207 aa11□□□□□ -0.65
VPS39-201ENST00000318006 ZNF296Q8WUU4 475 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 TMEM125Q96AQ2 219 aa11□□□□□ -0.65
VPS39-201ENST00000318006 MROQ9BYG7 248 aa11□□□□□ -0.65
VPS39-201ENST00000318006 EIF5A2Q9GZV4 153 aaKnown RBP11□□□□□ -0.65
VPS39-201ENST00000318006 ZNF334Q9HCZ1 680 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 TAC3Q9UHF0 121 aa11□□□□□ -0.65
VPS39-201ENST00000318006 A0A0G2JMP0 313 aa11□□□□□ -0.65
VPS39-201ENST00000318006 GMFGO60234 142 aa11□□□□□ -0.65
VPS39-201ENST00000318006 UBXN7O94888 489 aa11□□□□□ -0.65
VPS39-201ENST00000318006 TFP02787 698 aa11□□□□□ -0.65
VPS39-201ENST00000318006 UQCRC2P22695 453 aa11□□□□□ -0.65
VPS39-201ENST00000318006 HNF1BP35680 557 aa11□□□□□ -0.65
VPS39-201ENST00000318006 RPS5P46782 204 aaKnown RBP11□□□□□ -0.65
VPS39-201ENST00000318006 CXCR4P61073 352 aa11□□□□□ -0.65
VPS39-201ENST00000318006 GPR19Q15760 415 aa11□□□□□ -0.65
VPS39-201ENST00000318006 GFOD2Q3B7J2 385 aa11□□□□□ -0.65
VPS39-201ENST00000318006 NKAPLQ5M9Q1 402 aa11□□□□□ -0.65
VPS39-201ENST00000318006 ZNF648Q5T619 568 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 CNIH2Q6PI25 160 aa11□□□□□ -0.65
VPS39-201ENST00000318006 WDR53Q7Z5U6 358 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 LRRTM3Q86VH5 581 aa11□□□□□ -0.65
VPS39-201ENST00000318006 KLBQ86Z14 1044 aa11□□□□□ -0.65
VPS39-201ENST00000318006 METTL4Q8N3J2 472 aa11□□□□□ -0.65
VPS39-201ENST00000318006 DTWD1Q8N5C7 304 aa11□□□□□ -0.65
VPS39-201ENST00000318006 RASGEF1AQ8N9B8 481 aa11□□□□□ -0.65
VPS39-201ENST00000318006 OR2T33Q8NG76 320 aa11□□□□□ -0.65
VPS39-201ENST00000318006 OR4M2Q8NGB6 313 aa11□□□□□ -0.65
VPS39-201ENST00000318006 KCNN1Q92952 543 aa11□□□□□ -0.65
VPS39-201ENST00000318006 L3HYPDHQ96EM0 354 aa11□□□□□ -0.65
VPS39-201ENST00000318006 SLC38A3Q99624 504 aa11□□□□□ -0.65
VPS39-201ENST00000318006 RAD9AQ99638 391 aa11□□□□□ -0.65
VPS39-201ENST00000318006 OR51E2Q9H255 320 aa11□□□□□ -0.65
VPS39-201ENST00000318006 RNF186Q9NXI6 227 aa11□□□□□ -0.65
VPS39-201ENST00000318006 UTS2RQ9UKP6 389 aa11□□□□□ -0.65
VPS39-201ENST00000318006 ACSL5Q9ULC5 683 aa11□□□□□ -0.65
VPS39-201ENST00000318006 OXTRP30559 389 aa11□□□□□ -0.65
VPS39-201ENST00000318006 PLEKHS1Q5SXH7 462 aa11□□□□□ -0.65
VPS39-201ENST00000318006 METTL11BQ5VVY1 283 aa11□□□□□ -0.65
VPS39-201ENST00000318006 NECAB3Q96P71 396 aaPredicted RBP11□□□□□ -0.65
VPS39-201ENST00000318006 C7orf50Q9BRJ6 194 aaKnown RBP11□□□□□ -0.65
VPS39-201ENST00000318006 ZNF649Q9BS31 505 aa11□□□□□ -0.65
VPS39-201ENST00000318006 OR51J1Q9H342 316 aa11□□□□□ -0.65
VPS39-201ENST00000318006 NPAP1Q9NZP6 1156 aa11□□□□□ -0.65
VPS39-201ENST00000318006 CD300AQ9UGN4 299 aa11□□□□□ -0.65
VPS39-201ENST00000318006 POU2F3Q9UKI9 436 aa11□□□□□ -0.65
VPS39-201ENST00000318006 C2orf78A6NCI8 922 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 RHPN2P1A8MT19 583 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ARPC5O15511 151 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 PRAF2O60831 178 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ADAP00813 363 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 DRD5P21918 477 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 GRIN2CQ14957 1233 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ZMYND11Q15326 602 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 ARL11Q969Q4 196 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 NT5DC2Q9H857 520 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 TEX10Q9NXF1 929 aaPredicted RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 MARCH4Q9P2E8 410 aaPredicted RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 DLGAP4Q9Y2H0 992 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 DDX60Q8IY21 1712 aaKnown RBP10.99□□□□□ -0.65
VPS39-201ENST00000318006 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 A0A1W2PQ09 198 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 SC5DO75845 299 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 IFNA2P01563 188 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 NUDT7P0C024 238 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 SH3BP2P78314 561 aa10.99□□□□□ -0.65
VPS39-201ENST00000318006 MLLT1Q03111 559 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms