RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CD1DP15813 335 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 STMN1P16949 149 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 EPORP19235 508 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 NRG3P56975 720 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 DCAF7P61962 342 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 PHEXP78562 749 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 DR1Q01658 176 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 PDIA2Q13087 525 aaKnown RBP13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 OR4D1Q15615 310 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 FBXO48Q5FWF7 155 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 HLA-DQA1Q5Y7H0 255 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 SCIMPQ6UWF3 145 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 TAOK1Q7L7X3 1001 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 STAG3L4Q8TBR4 150 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 ESAMQ96AP7 390 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 RILPQ96NA2 401 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 DACH2Q96NX9 599 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 ANGPTL4Q9BY76 406 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 UBQLN3Q9H347 655 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 NUDT4Q9NZJ9 180 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 JKAMPQ9P055 326 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 OPTCQ9UBM4 332 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 C15orf41Q9Y2V0 281 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 TSC22D4Q9Y3Q8 395 aa13.53□□□□□ -0.24
CCDC88B-201ENST00000301897 CSPG4Q6UVK1 2322 aa13.52□□□□□ -0.24
CCDC88B-201ENST00000301897 FN1P02751 2386 aaKnown RBP13.52□□□□□ -0.24
CCDC88B-201ENST00000301897 HIVEP2P31629 2446 aa13.52□□□□□ -0.24
CCDC88B-201ENST00000301897 C2orf92A0A1B0GVN3 265 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 K7EPI3 171 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 SAP18O00422 153 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 SH3BGRLO75368 114 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 ERN1O75460 977 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 SLC35E2BP0CK96 405 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 SLC35E2P0CK97 266 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 NR2F6P10588 404 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 TCP1P17987 556 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 PTX3P26022 381 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 CBLBQ13191 982 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 PCBP2Q15366 365 aaKnown RBP eCLIP13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 GRHL2Q6ISB3 625 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 CLEC9AQ6UXN8 241 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 DGAT2L6Q6ZPD8 337 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 SPATA6LQ8N4H0 392 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 ZNF441Q8N8Z8 693 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 C17orf47Q8NEP4 570 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 SPPL2AQ8TCT8 520 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 ZPLD1Q8TCW7 415 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 UBTD2Q8WUN7 234 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 SMPDL3BQ92485 455 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 ABTB1Q969K4 478 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 ISL2Q96A47 359 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 REPS1Q96D71 796 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 UBXN10Q96LJ8 280 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 TRIB1Q96RU8 372 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 GPR22Q99680 433 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 CPNE1Q99829 537 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 SFXN3Q9BWM7 321 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 EPB41L4BQ9H329 900 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 OR51B5Q9H339 312 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 TRMT1Q9NXH9 659 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 FETUBQ9UGM5 382 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 MTO1Q9Y2Z2 717 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 PCDHGA11Q9Y5H2 935 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 NPFFR2Q9Y5X5 522 aa13.52□□□□□ -0.25
CCDC88B-201ENST00000301897 PLPP1O14494 284 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 PHGDHO43175 533 aaKnown RBP13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 LRATO95237 230 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 ACSL3O95573 720 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 ACTL6AO96019 429 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 CYP4B1P13584 511 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 EPB42P16452 691 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 CD53P19397 219 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 HNRNPH2P55795 449 aaKnown RBP13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 EEF1A1P68104 462 aaKnown RBP13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 NKX6-1P78426 367 aaPredicted RBP13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 DDX39BQ13838 428 aaKnown RBP13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 TOMM20Q15388 145 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 C6orf163Q5TEZ5 329 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 EEF1A1P5Q5VTE0 462 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 C18orf63Q68DL7 685 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 CYP20A1Q6UW02 462 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 ZBED8Q8IZ13 594 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 HUS1BQ8NHY5 278 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 LINC01560Q8TB33 94 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 TMEM41AQ96HV5 264 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 TM9SF2Q99805 663 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 UGT2B28Q9BY64 529 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 ACBD3Q9H3P7 528 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 CAB39LQ9H9S4 337 aa13.51□□□□□ -0.25
CCDC88B-201ENST00000301897 DNHD1Q96M86 4753 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 KDM4EB2RXH2 506 aaPredicted RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 HRGP04196 525 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 HEXAP06865 529 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 FAM58BPP0C7Q3 252 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 TMIGD3P0DMS9 266 aaPredicted RBP13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 BMP7P18075 431 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 KRT15P19012 456 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 CASP3P42574 277 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 WNT3P56703 355 aa13.5□□□□□ -0.25
CCDC88B-201ENST00000301897 FBXW4P57775 412 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms