RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 C19orf60Q96EN9 201 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 METTL2AQ96IZ6 378 aaKnown RBP12.41□□□□□ -0.42
VPS28-201ENST00000292510 TSSK3Q96PN8 268 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 UTP23Q9BRU9 249 aaKnown RBP12.41□□□□□ -0.42
VPS28-201ENST00000292510 C1orf50Q9BV19 199 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 HES7Q9BYE0 225 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 ABI3Q9P2A4 366 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 BAIAP2L1Q9UHR4 511 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 PSME2Q9UL46 239 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 ZNF780BQ9Y6R6 833 aa12.41□□□□□ -0.42
VPS28-201ENST00000292510 TRAV17A0A0B4J275 112 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 AKAP10O43572 662 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 ZNF354AO60765 605 aaPredicted RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 SNNO75324 88 aaPredicted RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 ITGA10O75578 1167 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 ATP1B1P05026 303 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 BCKDHAP12694 445 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 CSNK2A2P19784 350 aaPredicted RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 SOX18P35713 384 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 GSTM5P46439 218 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 RPL14P50914 215 aaKnown RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 HK2P52789 917 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 SLC37A1P57057 533 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 SRSF11Q05519 484 aaKnown RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 MGAT2Q10469 447 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 OR1C1Q15619 314 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 INPP5JQ15735 1006 aaPredicted RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 PRICKLE4Q2TBC4 344 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 ATP6AP1LQ52LC2 224 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 C6orf136Q5SQH8 315 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 ANKRD26P1Q6NSI1 321 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 ZNF227Q86WZ6 799 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 CCDC116Q8IYX3 515 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 LRRC25Q8N386 305 aaPredicted RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 OR9A2Q8NGT5 310 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 CPT1CQ8TCG5 803 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 TUBGCP3Q96CW5 907 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 SNRNP40Q96DI7 357 aaKnown RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 ART5Q96L15 291 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 PPP3R2Q96LZ3 170 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 GAL3ST4Q96RP7 486 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 CCT7Q99832 543 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 BRINP2Q9C0B6 783 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 MANSC1Q9H8J5 431 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 MIEF1Q9NQG6 463 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 SLC35C2Q9NQQ7 365 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 KLHL1Q9NR64 748 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 MAT2BQ9NZL9 334 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 LRFN1Q9P244 771 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 MAP10Q9P2G4 905 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 MYOTQ9UBF9 498 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 MARCOQ9UEW3 520 aaPredicted RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 HAO1Q9UJM8 370 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 NTNG1Q9Y2I2 539 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 EPB41L3Q9Y2J2 1087 aaPredicted RBP12.4□□□□□ -0.42
VPS28-201ENST00000292510 TMED5Q9Y3A6 229 aa12.4□□□□□ -0.42
VPS28-201ENST00000292510 HMGB1P1B2RPK0 211 aaPredicted RBP12.39□□□□□ -0.43
VPS28-201ENST00000292510 FCHO1O14526 889 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 PRAMEF2O60811 474 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 NEURL1O76050 574 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 S1PR1P21453 382 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 MRPS35P82673 323 aaKnown RBP12.39□□□□□ -0.43
VPS28-201ENST00000292510 FUT7Q11130 342 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 DUSP8Q13202 625 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 EXOSC7Q15024 291 aaKnown RBP12.39□□□□□ -0.43
VPS28-201ENST00000292510 EBPQ15125 230 aaKnown RBP12.39□□□□□ -0.43
VPS28-201ENST00000292510 TRMT12Q53H54 448 aaKnown RBP12.39□□□□□ -0.43
VPS28-201ENST00000292510 ZNF385BQ569K4 471 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 ZNF766Q5HY98 468 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 C6orf163Q5TEZ5 329 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 ATG16L1Q676U5 607 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 RNF111Q6ZNA4 994 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 IKBIPQ70UQ0 350 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 HOMEZQ8IX15 550 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 LIX1Q8N485 282 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 TMEM156Q8N614 296 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 ZNF615Q8N8J6 731 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 FNDC5Q8NAU1 212 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 MDS2Q8NDY4 140 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 OR8K3Q8NH51 312 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 SUN3Q8TAQ9 357 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 BBS4Q96RK4 519 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 RASL10BQ96S79 203 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 NUF2Q9BZD4 464 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 ANKRA2Q9H9E1 313 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 GIMAP4Q9NUV9 329 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 ASF1BQ9NVP2 202 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 THAP1Q9NVV9 213 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 EHD3Q9NZN3 535 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 ENTPD4Q9Y227 616 aa12.39□□□□□ -0.43
VPS28-201ENST00000292510 YARS2Q9Y2Z4 477 aaKnown RBP12.39□□□□□ -0.43
VPS28-201ENST00000292510 MYO18BQ8IUG5 2567 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 NME6O75414 186 aaPredicted RBP12.38□□□□□ -0.43
VPS28-201ENST00000292510 OR6B1O95007 311 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 SNUPNO95149 360 aaKnown RBP12.38□□□□□ -0.43
VPS28-201ENST00000292510 CBX7O95931 251 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 KITP10721 976 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 PCSK2P16519 638 aa12.38□□□□□ -0.43
VPS28-201ENST00000292510 TRHRP34981 398 aaPredicted RBP12.38□□□□□ -0.43
VPS28-201ENST00000292510 SOX3P41225 446 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms