RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ZNF829Q3KNS6 432 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 FAM76BQ5HYJ3 339 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 GLT8D1Q68CQ7 371 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 MVB12BQ9H7P6 319 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 PAK1IP1Q9NWT1 392 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 HCFC1R1Q9NWW0 138 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 ABCG2Q9UNQ0 655 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 C10orf71Q711Q0 1435 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 PORP16435 677 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 PXNP49023 591 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 ZNF81P51508 661 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 GRIK2Q13002 908 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 ARSJQ5FYB0 599 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 KCTD18Q6PI47 426 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 FIP1L1Q6UN15 594 aaKnown RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 SPAG16Q8N0X2 631 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 BOLLQ8N9W6 283 aaKnown RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 NINJ1Q92982 152 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 FAM46AQ96IP4 442 aaKnown RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 SPEF1Q9Y4P9 236 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 PCDHGB6Q9Y5F9 930 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 PIAS3Q9Y6X2 628 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 BAZ2AQ9UIF9 1905 aaKnown RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 UBR1Q8IWV7 1749 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 CIB4A0PJX0 185 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 E2F3O00716 465 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 SORBS2O94875 1100 aaKnown RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 PTGER1P34995 402 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 NSDHLQ15738 373 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 RPS26P11Q5JNZ5 115 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 OR52E2Q8NGJ4 325 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 OR4K13Q8NH42 304 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 TSPEARQ8WU66 669 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 DAZLQ92904 295 aaKnown RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 PEX13Q92968 403 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 RFT1Q96AA3 541 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 TMEM19Q96HH6 336 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 RANBP9Q96S59 729 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 SLC17A9Q9BYT1 436 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 DUX1O43812 170 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 MAS1P04201 325 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 TMEM69Q5SWH9 247 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 KIAA0319Q5VV43 1072 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 ARSKQ6UWY0 536 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.94□□□□□ -0.66
USP53-201ENST00000274030 PHC2Q8IXK0 858 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 IQCF1Q8N6M8 205 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 CREB3L4Q8TEY5 395 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 SLC45A3Q96JT2 553 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 STRA6Q9BX79 667 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 TP63Q9H3D4 680 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 GPR83Q9NYM4 423 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 KCNS2Q9ULS6 477 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 DHDHQ9UQ10 334 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 LTN1O94822 1766 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 TEX13CA0A0J9YWL9 993 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 SCAMP2O15127 329 aaKnown RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 ADRB3P13945 408 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 NTSR1P30989 418 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 HHEXQ03014 270 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 SCAPQ12770 1279 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 SIX1Q15475 284 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 FCRLBQ6BAA4 426 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 MAMDC4Q6UXC1 1216 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 IGFN1Q86VF2 1251 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 OR5AR1Q8NGP9 310 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 MACROD1Q9BQ69 325 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 INPP5KQ9BT40 448 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 NKX2-4Q9H2Z4 354 aa10.94□□□□□ -0.66
USP53-201ENST00000274030 CICQ96RK0 1608 aaPredicted RBP10.94□□□□□ -0.66
USP53-201ENST00000274030 A6NLC8 198 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 KIAA0513O60268 411 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 GABBR2O75899 941 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 HNRNPA1P09651 372 aaKnown RBP eCLIP10.93□□□□□ -0.66
USP53-201ENST00000274030 OXTRP30559 389 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 LCN1P31025 176 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 CLDN8P56748 225 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 UGT3A2Q3SY77 523 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 TBRG1Q3YBR2 411 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 COMMD6Q7Z4G1 85 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 NR4A3Q92570 626 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 AKAP1Q92667 903 aaKnown RBP eCLIP10.93□□□□□ -0.66
USP53-201ENST00000274030 IL23AQ9NPF7 189 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 FAM118AQ9NWS6 357 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 ERVK13-1Q9NX77 482 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 KCMF1Q9P0J7 381 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 PCTPQ9UKL6 214 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 LIPT1Q9Y234 373 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 YARS2Q9Y2Z4 477 aaKnown RBP10.93□□□□□ -0.66
USP53-201ENST00000274030 ISPDA4D126 451 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 FAM171A2A8MVW0 826 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 SMAD6O43541 496 aaKnown RBP10.93□□□□□ -0.66
USP53-201ENST00000274030 KCNJ13O60928 360 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 GNAO1P09471 354 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 GJA8P48165 433 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 ECH1Q13011 328 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 SPHARQ15513 63 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 BTBD16Q32M84 506 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 CDKL4Q5MAI5 379 aa10.93□□□□□ -0.66
USP53-201ENST00000274030 C10orf62Q5T681 223 aaPredicted RBP10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms