RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 FBXL20Q96IG2 436 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 AGAP4Q96P64 663 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 BBS4Q96RK4 519 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 DEFB126Q9BYW3 111 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 LIN28AQ9H9Z2 209 aaKnown RBP11.87□□□□□ -0.51
SS18-202ENST00000269138 GIMAP4Q9NUV9 329 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 MAT2BQ9NZL9 334 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 SH3BP4Q9P0V3 963 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 ATP6V1HQ9UI12 483 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 TUBD1Q9UJT1 453 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 ENTPD4Q9Y227 616 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 DOCK10Q96BY6 2186 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 ATRXP46100 2492 aa11.87□□□□□ -0.51
SS18-202ENST00000269138 TMEM200CA6NKL6 621 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 ANKRD28O15084 1053 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 SCAMP2O15127 329 aaKnown RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 TBX19O60806 448 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 TGDSO95455 350 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 LAMP1P11279 417 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 CLCN2P51788 898 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 CLDN8P56748 225 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 MRPS35P82673 323 aaKnown RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 CEBPEQ15744 281 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 PRICKLE4Q2TBC4 344 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 TRMT12Q53H54 448 aaKnown RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 LACTB2Q53H82 288 aaPredicted RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 CRB2Q5IJ48 1285 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 ISLR2Q6UXK2 745 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 ASB18Q6ZVZ8 466 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 SPATA19Q7Z5L4 167 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 GALNT12Q8IXK2 581 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 LRRC34Q8IZ02 419 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 KAT2AQ92830 837 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 BRINP2Q9C0B6 783 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 GLIPR2Q9H4G4 154 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 CDCP1Q9H5V8 836 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 CCDC134Q9H6E4 229 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 ANKRA2Q9H9E1 313 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 NPHS2Q9NP85 383 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 FGFR1OP2Q9NVK5 253 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 AIG1Q9NVV5 245 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 PLA2G3Q9NZ20 509 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 DCTN4Q9UJW0 460 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 IGSF10Q6WRI0 2623 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 DYRK3O43781 588 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 NME6O75414 186 aaPredicted RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 F10P00742 488 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 VIMP08670 466 aaKnown RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 PCSK2P16519 638 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 PRPS1L1P21108 318 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 HPCAL1P37235 193 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 CD97P48960 835 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 NCBP2P52298 156 aaKnown RBP eCLIP11.86□□□□□ -0.511e-8■■■□□ 16.9
SS18-202ENST00000269138 AP2B1P63010 937 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 FUT7Q11130 342 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 MAP4K2Q12851 820 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 SF3A3Q12874 501 aaKnown RBP eCLIP11.86□□□□□ -0.514e-6■■■■□ 22.2
SS18-202ENST00000269138 DUSP8Q13202 625 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 EXOSC7Q15024 291 aaKnown RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 ZNF628Q5EBL2 1059 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 COLEC12Q5KU26 742 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 ACER2Q5QJU3 275 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 HSDL2Q6YN16 418 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 ZNF551Q7Z340 670 aaPredicted RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 R3HCC1LQ7Z5L2 792 aaKnown RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 RPS19BP1Q86WX3 136 aaKnown RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 C9orf40Q8IXQ3 194 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 SAMD14Q8IZD0 417 aaPredicted RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 CEP70Q8NHQ1 597 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 CTHRC1Q96CG8 243 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 MTERF3Q96E29 417 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 ZNF764Q96H86 408 aaPredicted RBP11.86□□□□□ -0.51
SS18-202ENST00000269138 TEX37Q96LM6 180 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 AMDHD1Q96NU7 426 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 SLC25A18Q9H1K4 315 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 STMN3Q9NZ72 180 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 COPS7AQ9UBW8 275 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 ZNF639Q9UID6 485 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 ZNF451Q9Y4E5 1061 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 CSAG2Q9Y5P2 127 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 GPR45Q9Y5Y3 372 aa11.86□□□□□ -0.51
SS18-202ENST00000269138 TNRC6AQ8NDV7 1962 aaKnown RBP11.85□□□□□ -0.51
SS18-202ENST00000269138 C9JVG2 144 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 PDPK1O15530 556 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 ZFAND5O76080 213 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 CBX7O95931 251 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 ALPPP05187 535 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 NTSP30990 170 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 MPIP34949 423 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 SLC37A1P57057 533 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 MLF1P58340 268 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 C21orf58P58505 322 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 UFM1P61960 85 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 RNF4P78317 190 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 MFAP5Q13361 173 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 PGS1Q32NB8 556 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 SOWAHCQ53LP3 525 aaPredicted RBP11.85□□□□□ -0.51
SS18-202ENST00000269138 CPTPQ5TA50 214 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 ABHD17BQ5VST6 288 aa11.85□□□□□ -0.51
SS18-202ENST00000269138 CGB2Q6NT52 195 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms