RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 TSEN54Q7Z6J9 526 aaKnown RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 GALNT5Q7Z7M9 940 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 EID2Q8N6I1 236 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 NUP43Q8NFH3 380 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 MMABQ96EY8 250 aaPredicted RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 DDX18Q9NVP1 670 aaKnown RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 ADPRHL2Q9NX46 363 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 KLK4Q9Y5K2 254 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 CYR61O00622 381 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 FOXS1O43638 330 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 SIGLEC6O43699 453 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 PGM3O95394 542 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 FABP3P05413 133 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 LYNP07948 512 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 TFPTP0C1Z6 253 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 OR1D4P47884 311 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 SELENOWP63302 87 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 BTG2P78543 158 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 EXOSC7Q15024 291 aaKnown RBP15.5■□□□□ 0.07
USP4-201ENST00000265560 NHSL2Q5HYW2 709 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 TCEAL6Q6IPX3 200 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 SLC9A6Q92581 669 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 TCEAL3Q969E4 200 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 TCTN2Q96GX1 697 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 BTBD9Q96Q07 612 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 PDE7BQ9NP56 450 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 ADAP2Q9NPF8 381 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 BAG5Q9UL15 447 aa15.5■□□□□ 0.07
USP4-201ENST00000265560 TMEM221A6NGB7 291 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 M0R296 226 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 PRKNO60260 465 aaPredicted RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 RASAL1O95294 804 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 DCTP40126 519 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 ARL4DP49703 201 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 GANABQ14697 944 aaKnown RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 REEP3Q6NUK4 255 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 TTLL10Q6ZVT0 673 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 SPRED1Q7Z699 444 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 RBM45Q8IUH3 476 aaKnown RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 LRRC25Q8N386 305 aaPredicted RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 SLC16A11Q8NCK7 471 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 VANGL1Q8TAA9 524 aaPredicted RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 ATOH1Q92858 354 aaPredicted RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 GATA6Q92908 595 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 THAP11Q96EK4 314 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 COL21A1Q96P44 957 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 TREX2Q9BQ50 279 aaPredicted RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 DOHHQ9BU89 302 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 PHF11Q9UIL8 331 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 HYKKA2RU49 373 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 TLCD2A6NGC4 264 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 TMEM150CB9EJG8 249 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 MITFO75030 526 aaPredicted RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 GLB1P16278 677 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 NT5EP21589 574 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 CD1CP29017 333 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 ZC3H12BQ5HYM0 836 aaKnown RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 PERM1Q5SV97 790 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 ZC3H14Q6PJT7 736 aaKnown RBP15.49■□□□□ 0.07
USP4-201ENST00000265560 WDR5BQ86VZ2 330 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 PRSS58Q8IYP2 241 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 ZFP28Q8NHY6 868 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 ZDHHC12Q96GR4 267 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 C7orf34Q96L11 122 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 TMEM38AQ9H6F2 299 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 SEMA3GQ9NS98 782 aa15.49■□□□□ 0.07
USP4-201ENST00000265560 NUDT21O43809 227 aaKnown RBP15.48■□□□□ 0.07
USP4-201ENST00000265560 HS6ST1O60243 411 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 CPMP14384 443 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 FOLR1P15328 257 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 ZNF10P21506 573 aaPredicted RBP15.48■□□□□ 0.07
USP4-201ENST00000265560 SOX18P35713 384 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 ARSFP54793 590 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 SLC13A2Q13183 592 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 ZNF630Q2M218 657 aaPredicted RBP15.48■□□□□ 0.07
USP4-201ENST00000265560 GPAT3Q53EU6 434 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 COMTD1Q86VU5 262 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 EID3Q8N140 333 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 OR52E4Q8NGH9 312 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 YY1AP1Q9H869 796 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 CTPS2Q9NRF8 586 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 OLAHQ9NV23 265 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 FER1L5A0AVI2 2057 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 CT62P0C5K7 136 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 EPHA8P29322 1005 aaPredicted RBP15.48■□□□□ 0.07
USP4-201ENST00000265560 RFX3P48380 749 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 INTS11Q5TA45 600 aaKnown RBP15.48■□□□□ 0.07
USP4-201ENST00000265560 OR2T5Q6IEZ7 315 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 OR52E8Q6IFG1 317 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 OR2T29Q8NH02 315 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 ARSGQ96EG1 525 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 PRR14Q9BWN1 585 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 SAMHD1Q9Y3Z3 626 aaKnown RBP15.48■□□□□ 0.07
USP4-201ENST00000265560 KIF26BQ2KJY2 2108 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 HRKO00198 91 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 PRSS23O95084 383 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 FUT5Q11128 374 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 PRTGQ2VWP7 1150 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 TRIM61Q5EBN2 209 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 CCNJQ5T5M9 372 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms